FMO03059.5prime Sequence
1273 bp (1027 high quality bases) assembled on 2008-07-09
> FMO03059.5prime
CGTATAGCATACATAAAACGAAGTTATCAGTCGACATGGAACCCGGTCCT
AGTGCAGTGAACTACGAAGGCAGTGAATCTGTATGCGGCATGCCGGTGGA
GGCTCACGATCCTCTCTACTTGAAGGCCTATCGCCAGAGTGTTCAGAATC
CGGCTGCATTTTGGGAGGAGCAGGGTAACCTGCTCGACTGGGATCGGCCA
TGGGAGAAGGTACTGGACAACAGTAATCCGCCATTCACCAAGTGGTATGT
GGGTGGCTACCTGAATGCCTGCTACAATTCCATTGATCGCCACATACTGG
CCGGCCGCGGCTCCAATGTGGCCCTAATCCATGACAGCCCCTTGACTGGC
ACACTGCGTCGGGTTACCTATCAGGAGCTGTATGACCAGATCGTTCTGCT
GGCAGGCGGCCTGGCCAAATTGGGCGTGGTCAAAGGTGATCGCGTCGTGA
TCTACATGCCCCTCATCCCGGAGACCATCATTGCCATGCTGGCAATTGTG
CGTCTGGGTGCGATTCACTCCGTGGTCTTCGGTGGCTTCGCTGCCCGCGA
ACTCTGCTCGCGCATCGAACATGTGGAACCAAAACTGGTGATCGCCTCCA
ATGTGGGCGTGGAGCCGGGCAAAGTGGTGCCCTACCTGGACATCCTTCAT
TCAGCTATTAGCATGTCGCGATGGCGACCACCGCAGCGTAACATAATCTT
TCGGCGTGATAATGTTTCGCCAGATACCACCAAACTGGATCCTCTGACGG
ATGTGCTCTGGTCGGATATTCTTAAGATGGCGGAGGGCGAGCGGCCCATA
GCCTGTGTTCCCATCGAGGCCAACGATCCTTTGTATATCCTCTATACCTC
TGGAACGACGGATAAGCCCAAGGGAGTACTTCGCACCATCGGAGGTCACT
TGGTTGCTCTGGTGTACACGCTGAGAACTCTCTATGGCATCAATCCTGGC
ATACCTGGTGGGGCGGCCTCAGATATGGGCTGGGTGGTGGGTCACTCGTA
CATCTGCTACGGTCCACTCTGCCTCGGAGCCACCATGTTATGTACGAGGG
TAAACCGGACCGTACCTCCTGACCCGGTCAGTACTTTAAGAATATCGAAC
CAATACCAGTTGCGCCCGATCTTTCTCGGTAACCTACCTCCCTTCGGTTA
TTCGTCTGGCGGAATCCGGGAAATCAGCCTTAAGGCCACGGTACTCCATG
AGTTCCGGGTGCGGTATCCAACATCCTTCATGGACCGGGCGACAACATGC
GCTACTATCAGAGACCATCGATC
FMO03059.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6432-RB | 2715 | CG6432-RB | 113..1274 | 36..1201 | 5280 | 97.4 | Plus |
| CG6432-RA | 2267 | CG6432-RA | 113..1274 | 36..1201 | 5280 | 97.4 | Plus |
| Dis3-RA | 3588 | CG6413-RA | 3374..3412 | 36..74 | 195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24337847..24338863 | 73..1088 | 4830 | 99.4 | Plus |
| 3R | 32079331 | 3R | 24337034..24337072 | 36..74 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:52:23 has no hits.
FMO03059.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:05 Download gff for
FMO03059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6432-RA | 106..1232 | 29..1156 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:23 Download gff for
FMO03059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6432-RA | 106..1232 | 29..1156 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:41 Download gff for
FMO03059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6432-RA | 106..1232 | 29..1156 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:41 Download gff for
FMO03059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24337027..24337070 | 29..72 | 93 | -> | Plus |
| 3R | 24337847..24338864 | 73..1089 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:23 Download gff for
FMO03059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20162749..20162792 | 29..72 | 93 | -> | Plus |
| arm_3R | 20163569..20164586 | 73..1089 | 99 | -> | Plus |
