FMO03060.5prime Sequence
1249 bp (1040 high quality bases) assembled on 2008-07-09
> FMO03060.5prime
TCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGGATACGACGCA
AAGGAACCACCAAAATCTAGCCTTCGTGGGCGACGACGGACGCAGTACGG
CCAGCACAGTGGAGATTTCGACCAACAGTCCAGCCCTGCGAGATAATTCC
GATGACCAGGAGGCAGCCAAAGTGCCAGAGGAGCGTGCCACCTGGGGCAA
GGGCGTGGAGTTTCTGATGTCCTGCATCGCCATGTCCGTGGGTCTGGGAA
ACGTGTGGCGATTCCCCTTTACTGCCCTCGATAATGGCGGTGGCGCCTTC
CTCATACCATATCTCATTGTCCTGTTCCTGATTGGCAAACCGATTTACTA
TCTGGAAATGGTAATTGGCCAGTTTTCCAGTCGGGGCTCGGTTAAAGTGT
TCGATTTGTGCCCGGCGATGAAAGGTGTTGGAGCTGGCCAGGCTTTCCAG
GTGTTCATGCTCAGCACTTACTATGCCGCCCTGGTAGCGATAATTGGCCG
ATATTTCATTGAATCATTTCGCAACCCATTGCCCTGGTCCACATGCCGTG
CGGAATGGGGTATCCACTGCATTAACTCAGCCCCCGATGCGAGTAATTGG
TCTCAACTGGAAAGCAATGATCAGCGCCCGCAAAATTACACAATGAAATC
ACAAAACGATCGGGTCATCACCAGTTCGGAATGGTACTTTGTTAAGGAAG
TGCTGCACGAGAAACCAAATATCGAGGAAGGAATCGGCCTACCAAACTGG
GAGTTGGTCATTGGACTTTTTATCGCCTGGTCCTGTGTGTTTTTCATTAT
TCGTCGCGGAGTGAAGAGTTCGGGAAAGGCATCCTACTTCCTGGCCCTTT
TCCCGTACGTCATCATGGGTGTTCTTCTGGTGCGAGCTGTAACTCTGCCG
GGATCATAAACGTATATACTACTTTATAAGCCGCAATGGGAAAGATTTTG
GACCCGAAAGTTTGGTACGCGGCTGTACTCATGTTTCTACTCTGTCCGTT
GTTTCGGCAACATCATCATGTACTTCTCGTCAACAGTTCGGCACAATGTT
ACCAGGGATGCAGCATTGTATCGGGTCTGGACCTATTGACCCTCTCTGCT
AGCTGGAATCACGATATTTCCGGATATCCCTCGGCCATTCTGGCAAGGAA
ATCGGAATCGATGACATTCGGCTCATTGGGAGGCGGTTCGAATGCTCTTG
TTCTCTATTCCGATGCCATGGCAATTCAGAATTCTTGGCCACCATACTT
FMO03060.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15279-RA | 2110 | CG15279-RA | 67..1212 | 37..1175 | 5050 | 97.1 | Plus |
| CG15279-RB | 2531 | CG15279-RB | 488..1633 | 37..1175 | 5050 | 97.1 | Plus |
| CG15279-RD | 2513 | CG15279-RD | 488..893 | 37..442 | 1970 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14848672..14848978 | 426..120 | 1535 | 100 | Minus |
| 2L | 23513712 | 2L | 14846790..14847060 | 692..422 | 1355 | 100 | Minus |
| 2L | 23513712 | 2L | 14846057..14846494 | 1118..693 | 1350 | 94.1 | Minus |
| 2L | 23513712 | 2L | 14849039..14849122 | 120..37 | 420 | 100 | Minus |
| 2R | 25286936 | 2R | 12300722..12300885 | 356..193 | 325 | 79.9 | Minus |
| 3L | 28110227 | 3L | 9212982..9213163 | 206..387 | 310 | 78 | Plus |
| 2R | 25286936 | 2R | 9795678..9795857 | 208..387 | 240 | 75.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:48:53 has no hits.
FMO03060.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:40 Download gff for
FMO03060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15279-RA | 39..1199 | 37..1187 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:00 Download gff for
FMO03060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15279-RB | 488..1648 | 37..1187 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:49 Download gff for
FMO03060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15279-RB | 488..1648 | 37..1187 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:49 Download gff for
FMO03060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14845990..14846494 | 693..1187 | 92 | <- | Minus |
| 2L | 14846790..14847057 | 425..692 | 100 | <- | Minus |
| 2L | 14848674..14848977 | 121..424 | 100 | <- | Minus |
| 2L | 14849039..14849122 | 37..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:00 Download gff for
FMO03060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14845990..14846494 | 693..1187 | 92 | <- | Minus |
| arm_2L | 14846790..14847057 | 425..692 | 100 | <- | Minus |
| arm_2L | 14848674..14848977 | 121..424 | 100 | <- | Minus |
| arm_2L | 14849039..14849122 | 37..120 | 100 | | Minus |
