FMO03061.5prime Sequence
1265 bp (1045 high quality bases) assembled on 2008-07-09
> FMO03061.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTCTCGAAAGAAGT
GGTCTTCGTTGGACAAACCGCCCCTCTCAGATGCAGTGCTTCAAGTGGTG
CAGAGCTTCGGCTTCCAGCAGATGACGCCCGTCCAGACGGCGGCCATACC
GCTACTTCTGGCCCGGAAGGATGTCTCAGCGGAGGCTGTTACTGGTAGTG
GTAAAACGCTAGCCTTCCTTGTGCCCATGCTAGAAATCCTCCAGAGACGG
CACAAGGAGACCCCGTGGGGCCCCAAGGAAATAGGTGCCCTCGTCATCTC
ACCAACCCGGGAACTGGCGCGCCAAATCTCCGAGGTCCTAGCCCAGTTTT
TGGAACACGAAGACTTGGAGCACCTGAATCAACAGTTGATTGTAGGCGGC
AACAGCATTGAAGAGGACATTGCCACGCTGCGTAGGGAAACGCCGTGTAT
ACTGGTGTGCACTCCCGGTCGGCTGGAGGATCTATTTCAGCGCAAAGGAG
ATGATCTTAATCTGGCGGCTCAAGTGAAGAGTTTGGAGTTTCTCGTCTTA
GACGAAGCTGACCGCCTGTTGGACTTGGGCTTTAAAACAAGTGTAAATAA
CATACTGGGCTATCTGCCCCGCCAACGTCGAACTGGGCTCTTTTCCGCCA
CACAGACTACCGAGGTTACGGACTTAATCCGTGCGGGGTTGAGAAATCCT
GTTCTCGTATCAGTCAAAAGAGAAGGCATCCGTAAACACTCCAGCCCGCC
TGCAGAACTTCTACAGGATTGTCGAGCCAGAACTAAAGTTTGTGGCCCTG
CTGGAGTTCCTCAGTTCACCCGCCACCGGTTATTGGAAAGGTAATGGTCT
TTTTCCCCACCTGCGCCTGTGTGGAGTATTGGGCTGAGGCCCTGCCGCCT
CTTTGCCCAAACGCACAGTGCTAGGAATCCACGGGAAAGATGAAAACAAA
GAGGGCCAATGTGGTGGAAAAGTTTCGGAACACTCCACAGGCGTACCTCC
TCTGCACAGAATGTCCTCGCACGTGGTTTGGATGTTACCTGAAGATCGAA
TGGGGTAGTGCAATTGGGAATCCACCATCAACCTGCCCTCCCAGCCTTTG
TACCACCGTGTAAGTCGCACCGCTCGGCCAGGTAAACCAAGGGCCAACGC
CCTCTGGTGTTTCTCCCCTGCCCAGCCGAGAAATGCCCTAGTGAACTCCT
GAGATCACCGGAGTGTGGACCTAAACATAACCGCCCTAACTCCAGAGAGG
CCGTAAAGAATTCTC
FMO03061.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9630-RA | 1954 | CG9630-RA | 55..1176 | 35..1176 | 5005 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8268845..8269842 | 1035..35 | 4655 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:14:06 has no hits.
FMO03061.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:00 Download gff for
FMO03061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-RA | 35..1171 | 27..1187 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:12 Download gff for
FMO03061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-RA | 49..1185 | 27..1187 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:44 Download gff for
FMO03061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-RA | 49..1185 | 27..1187 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:44 Download gff for
FMO03061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8268712..8269842 | 33..1187 | 96 | -- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:12 Download gff for
FMO03061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4094434..4095564 | 33..1187 | 96 | -- | Minus |
