FMO03062.5prime Sequence
1208 bp (1025 high quality bases) assembled on 2008-07-09
> FMO03062.5prime
AGCATACATTATACGAAGTTATCAGTCGACATGGCCGCTGAGGAGACGGC
GCTAACCGGCGTCGGCGAGCTACTATTCTCGCTGCTAATTGGATACCTAG
GTGCCCTGGAATTCGCCTTTGTGGCGCGCCATCTATACCACTGGACTTTC
CAACATCCCGGCGATTCTTCTGTAGATGCAGCAGCTGACGCAGAAGAATT
GCCTCGCATGCGAGAGCGATTGGATAAGCAGATCAAGGAGGCGGCGGAAA
GGGAAGCCCTGGCAGGAACCAATGTCATGCAGGATGGTGTCCTATATGTC
AATGGAATACGAGTAGATCCTGCTGGAGATAAAAGACAAGCTTTGGCAGC
CGAACTGGCACGTCAACAGCAAATTGAAGCCGATACGAGGCGTCAGCTGG
CCGAAGCCGAGGCCAAGCTGGTAGAAGAAAGACTACGAGTCCAGAGGGAG
AAAGAGGAATCGGAGGAGCAGCAGAGAAAGCTCGTAGAGGCGGAAAGACA
GCGCGAAAGAGAGCAGGCGGAGAAAGAACTGCAGGAACAAAGAGAAGCCG
AACGCAGACAGCTAGAAGCAGAAGAAAATCAGCGTAAACAGCGCGAAAAC
GAGGAGAAAGAACGCCTAGAAAACGAAAGAAGGCTGATAGATGCCGAACG
GGAAAGGGAGGAGAATGAGCGAAGACTGCAAGAAGCTGAAGAGCAGCGCG
AGCGAGAAGAAAGCGAAAGAAGAATCGTCGTGGCAGAGCGTCAGAGAGAG
CAGCCGAAGCCGAAAAGGAGCGAGCCGAACAACAAAGGATCCTGGCTGAA
GCCGAGGCAGCGCAAGCCGAGCGTCGTCTCTTTGATGCCGAGATTCAGCG
AGAGCGCGATCAAGCTGACGAAGAAGGCAAGCACTGAGGGATGCGGAGAT
CGTAGAGCGTCTTCTGGCAGCAGAAGAGAGCTCAGTCCAAGCGCTACAGA
GAGCGAACTGGAGGCGATGCTGCCATCGCAGAGCAGTCGCGTCGCCTGAC
CTCCAGCGAACTGATCTGGAGCAAAAACAGCGATGATGAGAAACGCCAGA
CGCTTTCTGGAGGCAGAAGAAGAAATGGTAATGTTACAACGCGCCACTCA
GCCCTCACCCAGCAAGAGGGAAGTGACGAGTAGCTGGCATGGGAACCGGG
TGGAGAACTTGTGTGTGTGAAATGTCCACCCAGGTTCCGGACCCTCCCAA
GAAACTCA
FMO03062.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lmpt-RL | 3051 | CG42679-RL | 639..1825 | 31..1197 | 5140 | 96.6 | Plus |
| Lmpt-RK | 7424 | CG42679-RK | 639..1825 | 31..1197 | 5140 | 96.6 | Plus |
| Lmpt-RJ | 4501 | CG42679-RJ | 639..1825 | 31..1197 | 5140 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16900053..16901121 | 31..1090 | 4860 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:16:52 has no hits.
FMO03062.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:09 Download gff for
FMO03062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11915-RA | 577..1655 | 22..1090 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:34 Download gff for
FMO03062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RJ | 629..1707 | 22..1090 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:10 Download gff for
FMO03062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RJ | 629..1707 | 22..1090 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:10 Download gff for
FMO03062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16900043..16901143 | 22..1108 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:34 Download gff for
FMO03062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16893143..16894243 | 22..1108 | 97 | <- | Plus |
