FMO03065.5prime Sequence
1251 bp (1029 high quality bases) assembled on 2008-07-09
> FMO03065.5prime
TTCGTATAGCATACCTTAAACGAAGTTATCAGTCGACATGTTGCGCAACA
CGCCTTTCGGTGCCACGCCCACCTACAAACTACTTCTGGGCTTCGGACTA
TGCTCCCTTGGGGGCGCCATGCTATATGCCTATTTCAAGACTCGAAACGA
CGAGGAGGAAGCGGACTCAGGTGGCCAACGGCCGGCATCCGGGATTAGAG
GACAGACAGAGGAACAGAAGCCCCAGAAGGAAGTGTGCCTCAAAATCGTC
GTGGACAACGAGCATGTGCCCCTGATAATGGGTCGCGGTGGATCCAATAT
CAAGTTGATTGAAGAAAAGACCCTGGCCAAGATAAGATTACGAGACAAAG
ACAGTGGCCACAAATTCTGCGACATTAGCGGCGTTCCCGATGCGGTTAAG
GCGGCTCGAGCTCTGCTTATCAAGGAAATTGAACGTGCGCCCGTGGTGAA
AGTGGAACTGCAGGTGCCCCAGAGGCTGGCCAGCAAAATTAACGGACGCG
GCGGCGAGCTCCTCCAGGAGATCCGGAGCAGTTCGCTAGCCAAGCTGAAT
ATCGATTTAAATGGGCGGAATGGAAAGGCCAAGATTACGATTATCGGCAA
TCAAAAGCAAGTGAACATAGCCCGAAAAATGCTGGATGATCAGATAGAGG
AGGATGAGGAACTCGTGCGGTCCATGGAGGAGGTGGAACAGCGTCGGGAG
CCCCGCAGATCTCCCACCAACAGCATTGCGTCCAGCATGTACTCCTCCCA
GACATCCCTAAGCTCTCACACTCAGCCCAGAGACAAGCTAATGGCCTCCA
AGGGCGAGGGTAAGCCAATGGAGGTTTATGTCTCCGCGGTGGCCTCGCCC
ACTAAATTCTGGGTTCAGCTTATCGGACCGCAGTCCAAGAAGCTCGATAG
CATGGTCCAGGAGATGACAAGCTATTATAGTAGTGCTGAAAACAGGGCCC
AGCACGTGCTGACTGCTCCATATGTGGGTCAGATTGTGGCAGCCGTGTTT
AAGTTCGACGAGGAGTGGTATCCCCGCAGACGTCGGGGACATTATGCCTT
ACAAGTACATCCAAAGGGAGCAGGTGATCGATCTCTTACTTCGTGAACTA
TTGGAAAAGCGAATATATTTCGCCAGCTGATATTTCTTGCGAGCTGGCCA
CTTGAATTTTCCTCACGCCTCAGGGTTCCAAGCCGGTATGCTTTTGGCTA
TTTAAAATCTACTATTCGGAGCAGGAGCTTATATTACGTGTGCCCAGAGT
G
FMO03065.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| papi-RD | 2112 | CG7082-RD | 128..1298 | 36..1212 | 5255 | 97.1 | Plus |
| papi-RB | 2235 | CG7082-RB | 199..1369 | 36..1212 | 5255 | 97.1 | Plus |
| papi-RC | 2331 | CG7082-RC | 295..1465 | 36..1212 | 5255 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2223704..2224493 | 342..1133 | 3590 | 97.5 | Plus |
| 2L | 23513712 | 2L | 2223327..2223633 | 36..342 | 1535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:29:47 has no hits.
FMO03065.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:12 Download gff for
FMO03065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7082-RB | 186..1354 | 19..1198 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:35 Download gff for
FMO03065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| papi-RC | 282..1450 | 19..1198 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:11 Download gff for
FMO03065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| papi-RC | 282..1450 | 19..1198 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:11 Download gff for
FMO03065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2223314..2223633 | 19..342 | 98 | -> | Plus |
| 2L | 2223705..2224500 | 343..1143 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:35 Download gff for
FMO03065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2223314..2223633 | 19..342 | 98 | -> | Plus |
| arm_2L | 2223705..2224500 | 343..1143 | 97 | <- | Plus |
