FMO03066.5prime Sequence
1261 bp (1058 high quality bases) assembled on 2008-07-09
> FMO03066.5prime
CGTATAGCATACCTTATACGAAGTTATCAGTCGACATGTCACATACCAAA
GATGCAGAGATGTCCATGCCCGCTCGGCAGGAATCTGATCGTACATCGGC
CCCATCTGTTACTAAATCCCTCACTCTGAACTCTACTCGGAGCGGGGTGG
GCACGGGAAACTTTGGGGGCTACGGCATGACGAACGGGGCCGAGAAACCT
TCTGTGCTGCACATGATAATGGAAGCCTTGGGTCTACGCAATCAGGCTCA
AAACCGCGAGCCAACATCCAAGGATATTGGAACTCTGATAATGCTGGGCG
TAATGTTTTTGCTCTTTGTAATCAGCGTGACCGGATTTTTCGTAATGTGG
TTTACCGAATATTACAACAACACCATTCTGGAGAACCTGATCCTGGCCGA
AAACTCGGATACCGCTAATAGTTGGCTTAACCCTGATCCTAAGTACGACA
CTTTGCTAAAGGCTCACATTTTTCACTACCCCAACATCGATGACTACTTA
GCAGGGCGGGCAGATAAAATAAAGGTCGTGGATGTGGGACCTCTCACCTA
CCAGGAACACACTGTTAAAGATGAAGTTTCCTTTAACAAAAATTTCACTG
TTAGCTTCAGGGACCGCAAGTCTTATAAGTTTCTCCCGGAAAAGTCGTCT
ATTGGGGAACACGAAGTGGTCAGGGTGCCCAATGTGCCGCTTATCTCTGC
CGCCGGACCAGTTAAGCGCATGAAGGCTTTCGAACGCTTAGCTGTATCCA
CTTGGATAAAACAATTCAAGGAGCCTCTCTTTAAGAATCTCACGGTTTCC
GAATATCTCTGGGGTTATGAGGACAGCATTATCAAGTTAAAATCACTGGG
CAGAGGGCGGGCGACGGTTTGGTCTTCTGATGAGCCGCAACGGGACTAGC
GTGATTCGGTCCAGCTTAATACAGGCGAGGACGACCTCAACAAGTTCAGC
ATCATTACCCAGTTTAACGGCATGCCCCAGTTGGACTACTGGGGAGGGGG
ATGAGTGCAATCGCATCGACGGCTCCGAGCCTTCTATGTCTCACCACATT
TGCTGCAGATCGCAGCACAGTTAATGTAATCCTCAAGGTGCTGTGCGCCA
AGGTGCCGCCTACCTTCGGAAAAGAAGGTAACATCTACACACGACATTGA
TGTTCTGGCCCTACCGGAGGCCATGGCAGATTCAGCATTCGGTCAATCTG
GCAACTAGTCTCTATATGTTCACGAACACATGAACTCTGGTGGCTTTGCC
CACGGCGAGAG
FMO03066.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3829-RB | 2059 | CG3829-RB | 72..1208 | 36..1173 | 5290 | 98.1 | Plus |
| CG3829-RA | 3159 | CG3829-RA | 1172..2308 | 36..1173 | 5290 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24988961..24989234 | 611..885 | 1310 | 99.3 | Plus |
| 2R | 25286936 | 2R | 24988215..24988470 | 36..291 | 1280 | 100 | Plus |
| 2R | 25286936 | 2R | 24988678..24988908 | 382..612 | 1155 | 100 | Plus |
| 2R | 25286936 | 2R | 24989292..24989564 | 886..1157 | 915 | 93.1 | Plus |
| 2R | 25286936 | 2R | 24988531..24988622 | 292..383 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:40:29 has no hits.
FMO03066.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:37 Download gff for
FMO03066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3829-RA | 1249..2401 | 25..1176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:15 Download gff for
FMO03066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3829-RA | 1160..2312 | 25..1176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:01 Download gff for
FMO03066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3829-RA | 1160..2312 | 25..1176 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:01 Download gff for
FMO03066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24988203..24988470 | 25..291 | 98 | -> | Plus |
| 2R | 24988531..24988622 | 292..383 | 100 | -> | Plus |
| 2R | 24988680..24988907 | 384..611 | 100 | -> | Plus |
| 2R | 24988962..24989234 | 612..885 | 99 | -> | Plus |
| 2R | 24989292..24989583 | 886..1176 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:15 Download gff for
FMO03066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20875726..20875993 | 25..291 | 98 | -> | Plus |
| arm_2R | 20876054..20876145 | 292..383 | 100 | -> | Plus |
| arm_2R | 20876203..20876430 | 384..611 | 100 | -> | Plus |
| arm_2R | 20876485..20876757 | 612..885 | 99 | -> | Plus |
| arm_2R | 20876815..20877106 | 886..1176 | 92 | | Plus |
