FMO03068.5prime Sequence
1247 bp (1035 high quality bases) assembled on 2008-07-09
> FMO03068.5prime
CGTATAGCATACATAATACAAAGTTATCAGTCGACATGGCCAAGGACTTG
AGCACTATGGGATGGGATTATCTGATGTTTGTACTGTTTATAGCCCTCAC
CGTTTTGGGCCCGTTGTGGAAACGCATTTTTGGCAAAAAGAAGGAGCGCA
GCAAGGCCGACTATGTTTTTGCCACCGGCGGAGTTTCGATAGTGGCAGTC
ATGATTTCCATTGCCCGAGGAACCTTGGGAGTGAGATCCGTGCTAGGCTA
TCCCAGTGAATTGTACTACCGCGGATCGGCCATGTGGGAGATCATCTACG
GCATGATGAGCGCCTATCCCATCGTTTGCTTCATGTTCGTGCCCGTGTAC
TTTAATCTGGGCATCACCTCCGTCTATCAGTACATCGATCTCAGGTTCAA
GAGCCGCACGGTGAGATGCCTGGCATCGGCGACATATATCGTGCGGCAGA
TCTGCAACCTTGGCATCACCGTGTACACTCCCAGCGTGGCCCTCTCGACG
GTGATTGGCATACCCTACTGGGCCTCCATTACGGGCATGGCCGTCATTTG
CATATTCTTCACCATTATGGGCGGCCTGAAGGCGGCTATCAACGCGGACG
TCATCCAGACAGTGACCATTCTGGTTGTCACTGTGGCGGTTTGTATCCAG
GGAACTATCTCTACGGGCGGCGTGAAGAAGGTTTACCAACTAAATCGGGA
CAATGGACGTCTCAACTTTTGGAACTTCACGGGCGATATGACTGTCAGAG
TGGATACCACATCGGCTTGGCTGGGCCAACTGTTCATGTCCCTCTCCCAG
ATCGGCTGTCAGCAGAACTTTATGCAGCGTTATGTCAGCCTCAAGTCGCT
CAAGCAAGTGCGTCGAGTTATGCTGACCAATGTGCCTTTGGTCTTCTTCT
TCTTTCCATTTCCTGGATCTCTGGCATGGTCGTCTATTCCACGTACATCA
ACTGCGAGTCCCTACGCCGAGGGCTACATTAAGAAACCCGGATGAAGATT
CTGCCATTCTTTGTGGAGGATCAGCTCGGTTTTCTGCCCGGTTTCGTGGC
ATTTTCATGGCCACCTCTGTTCAATGGCCCCCTTGCATGATGGTGTCGAA
TCTGATTCATGCCACGGTTATTTGGCGAAGAACTTCATCCACAGTGCCGA
AATTCCAGGAACCTCTCGACAACGCAGCTACAAATTTTGAAGTCGATATC
TACGTCCTGTGGAACCGTGTATTATTAGTGGCGCGCGTGGCTCCCCT
FMO03068.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7720-RF | 2471 | CG7720-RF | 192..1359 | 34..1197 | 5300 | 97.7 | Plus |
| CG7720-RE | 2607 | CG7720-RE | 328..1495 | 34..1197 | 5300 | 97.7 | Plus |
| CG7720-RD | 2758 | CG7720-RD | 479..1646 | 34..1197 | 5300 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18768871..18769084 | 247..34 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 18761831..18762008 | 570..393 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 18760995..18761155 | 865..705 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 18760701..18760918 | 1084..865 | 765 | 95.9 | Minus |
| 3R | 32079331 | 3R | 18768658..18768809 | 396..245 | 760 | 100 | Minus |
| 3R | 32079331 | 3R | 18761601..18761738 | 706..569 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:50:24 has no hits.
FMO03068.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:45 Download gff for
FMO03068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7720-RA | 136..1320 | 22..1206 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:28 Download gff for
FMO03068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7720-RD | 469..1653 | 22..1206 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:33 Download gff for
FMO03068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7720-RD | 469..1653 | 22..1206 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:33 Download gff for
FMO03068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18768872..18769094 | 22..246 | 97 | | Minus |
| 3R | 18761602..18761737 | 570..705 | 100 | <- | Minus |
| 3R | 18761832..18762006 | 395..569 | 100 | <- | Minus |
| 3R | 18768660..18768807 | 247..394 | 100 | <- | Minus |
| 3R | 18760699..18760917 | 866..1085 | 95 | <- | Minus |
| 3R | 18760995..18761154 | 706..865 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:28 Download gff for
FMO03068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14586421..14586639 | 866..1085 | 95 | <- | Minus |
| arm_3R | 14586717..14586876 | 706..865 | 100 | <- | Minus |
| arm_3R | 14587324..14587459 | 570..705 | 100 | <- | Minus |
| arm_3R | 14587554..14587728 | 395..569 | 100 | <- | Minus |
| arm_3R | 14594382..14594529 | 247..394 | 100 | <- | Minus |
| arm_3R | 14594594..14594816 | 22..246 | 97 | | Minus |
