FMO03069.5prime Sequence
1172 bp (717 high quality bases) assembled on 2008-07-09
> FMO03069.5prime
AATTCGTATAGCATAATTAAACGAAGTTATCAGTCGACATGACGCGCGAC
GGCGAAATTCCAGCTATTTTCAATCCGAAAAGAGTGCGCACTCCTTCCGT
GGTGGTCACCGGCGACTCCTCGACGAATGGACCGTACAGCAACAATAGCA
CCGGCGGGGCGGGAGCCAGCAGCATCACGGCAGTGGCCCCCGGTTCGTCT
GCCCAAAACGGCGGCAGTGGCAGCGGAGCAGCGGGCAGCTGCGGGTTCAG
CAACGTGCTCACCTCGAGCAATCCGCAAATAACCCACCAAGACTCGATAT
CGTCAAGCCAACAGGACCCCAATGAGGTGGTCATCATCCCGGCGGACACA
CCAACGAGCGCACCGGGCAGCCACAATGCGGCGCACCACTTCGGAGGCGG
CGACTCCAGCGACACCCAGACGGAGCAGCAGCAAGCCAACGGGCACGGCG
AGGAGTCCGAGCTTCGCTTCCGAAAGTTGCAGGCCTGCAAGGAGTCATGC
TGCTCCGAACTGGCCCGGAAGATGTACTTCGGAGTGTGCGTGACCATCCT
GATGACCGCGTCGTGGGTGGGGGCCACCCACTGCATTAAGTACATGTACA
AGTACCGTGCTCCGTACGACGACTTGCTGAACGACGACCAGGACACGTCC
TCGAGCCGCGCGGAACCTGACACGGAGCTGGAGGATATACTGGCCATCAA
CGACTCGTCGCTGCACCACGTCGAGGACGCCACCGAGATGTTCACATACC
ACCGCGCCAGCCGGTCTACTTCAGCGCCCCTTCTTCTCGCCTGTTTCTTC
ACCAACTTCTCGCTGCTCTTCTTCCCCATCTACCTGCTGGTCTGGTCTCC
AGCCGCAGTGCGAATAACTGAGCCACTTCCTTGGCGACGTGCTGCCAGGA
TTCCGGAACCCGGCTTTCAAGTGGGTCGCTCCTCGATCTGCTGCCTCTGC
TTCTTGCTTTTAGTGTTGGTTCCCTCCTACCGGACAACCTTCTCCTGGCA
CGTCCTCTTACGCTACGAATGCCCTGGCCCTTGTTCTCCCTCCAACGTGG
GCTATAGCTTGTAACCTGTTTATTCTGAGTGGATTCTTGCACAGAAAACG
ATACTTTGGACGATAGAACTCGTGGCCATTAACCTTTCGGCACAATGGTT
AATTTGGCTTTTTTCCCTTATT
FMO03069.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42322-RN | 3657 | CG42322-RN | 276..1291 | 38..1050 | 4195 | 95.3 | Plus |
| CG42322-RJ | 3627 | CG42322-RJ | 276..1291 | 38..1050 | 4195 | 95.3 | Plus |
| CG42322-RI | 3614 | CG42322-RI | 263..1278 | 38..1050 | 4195 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20746820..20747303 | 38..521 | 2390 | 99.6 | Plus |
| 3R | 32079331 | 3R | 20747362..20747753 | 520..906 | 1485 | 94.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:18:33 has no hits.
FMO03069.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:25 Download gff for
FMO03069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31203-RE | 263..1192 | 29..954 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:02 Download gff for
FMO03069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42322-RD | 269..1198 | 29..954 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:03 Download gff for
FMO03069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42322-RI | 256..1185 | 29..954 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:03 Download gff for
FMO03069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20746807..20747303 | 26..521 | 98 | -> | Plus |
| 3R | 20747364..20747772 | 522..924 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:02 Download gff for
FMO03069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16572529..16573025 | 26..521 | 98 | -> | Plus |
| arm_3R | 16573086..16573494 | 522..924 | 94 | -> | Plus |
