FMO03070.5prime Sequence
1221 bp (1057 high quality bases) assembled on 2008-07-09
> FMO03070.5prime
CGTATAGCATACATAAAACGAAGTTATCAGTCGACATGGATTTCGACGAG
GTGCTGCGGGAGGTGGGCTCCTTTGGTCTCTACCAGAAGGTCATCATCTG
TTCCGTTCTATTGCCCGCCGCGCTGCCCTGTGCCTTCCACGCATATAGCC
AGTTGTTCATAGCGGCCACACCTCAGCACTTTTGTCGCGTTCCTGAGCTG
GAGCCCTGGACGCAGGACTATGTGCAGCTTGTTAAGAACCTGAGCATTCC
GCGTAATCGCAATGGAGCCTATGCCGAGTGTTCCATGTACTCGAGAAATT
ACACCGATATAGTGCGCTATCTTGAGTATCGACCTCCTCCGGATTTGTTG
CGACAACAGGCAGAGGATTTGCTCAAGTTGCAGCCGGATACGACGCAGGT
GGTGCCGTGCCAACATGGCTGGCACTACGACAAGTCCATATACTCAAGTA
CGGTGGTTCAAGAGTGGAACCTGGTGTGCGACCGCAGCTTCCTTGTGACT
TTGGCGCTTGTGGTCTTCGGTGTTGGCGGATTGCTAGGTAACTATGTATT
TGGATATCTAGTGGATCTGTGGGGCAGGCGGCCATCCTTTTACGCTTATC
TGCTGCTCGAGATCATTGCCTGTGCGGCCAGTGCCTTTGCCTGGAACTAT
TACACTTGGTTGGGCCTGCGCTTTGTGGTGGGACTGACGGTGCCAGCTAT
TCTGGCGAGTCCCTATGTACTGGCCATTGAGCTGGTGGGACCGGAGAGGA
GAGTTTTTTGCACCATCGTCTCGAATATCGCCTACTCCTTGGGCTTGGTG
GTATTAGCCGGAGTTATCTATATCGTACGTGATTGGCGGGAACTCAGTTT
GGCAGTGTCCATGCCTTTGCTGATGCTTTTCTCCTGCTTCTTCGTGCTTT
CCGGAATCACCACGATGGTTAATGGCCGTGGGAAAACCAGGAGGGCCATT
AAATTCTCAAAGTATGGCCGGAGTGATGGTGTGCCGCGTAATCGGGATTT
TGTGACGGTTGCAGCGGAAACTTGTCATCACAAGGGCTGCGAACCAATCT
TCATGACCACCATTATGGATATTGGACTTGTTTCGGGACCCATATGCCTC
GGAGACCCTGATCATACCCTTATTGGGTTTGCAACCCAGGGTTCTACGTG
GAACTGATTATAGCTCTGGCCTTAGAGGGAGTGAATCTGAACTTCTTCTT
GACTGGGCGCGGTGACCGTGT
FMO03070.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3790-RA | 1947 | CG3790-RA | 80..1282 | 33..1214 | 5090 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12873598..12874282 | 1132..463 | 2510 | 95.5 | Minus |
| 2R | 25286936 | 2R | 12874339..12874657 | 464..146 | 1595 | 100 | Minus |
| 2R | 25286936 | 2R | 12874818..12874933 | 148..33 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:41:00 has no hits.
FMO03070.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:54 Download gff for
FMO03070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-RA | 72..1233 | 25..1166 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:19 Download gff for
FMO03070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-RA | 71..1232 | 25..1166 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:25 Download gff for
FMO03070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-RA | 71..1232 | 25..1166 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:25 Download gff for
FMO03070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12873560..12874280 | 465..1166 | 95 | <- | Minus |
| 2R | 12874339..12874654 | 149..464 | 100 | <- | Minus |
| 2R | 12874818..12874942 | 25..148 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:19 Download gff for
FMO03070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8761065..8761785 | 465..1166 | 95 | <- | Minus |
| arm_2R | 8761844..8762159 | 149..464 | 100 | <- | Minus |
| arm_2R | 8762323..8762447 | 25..148 | 96 | | Minus |
