FMO03071.5prime Sequence
1239 bp (1042 high quality bases) assembled on 2008-07-09
> FMO03071.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGCCGTACAGACCAG
CAAGCTATTACGATGCTGATCGCAAGATCTGGAGCGGAGACCAATTGGAA
TACTACTTCGACCCACATCTGTCCATCGGAGAGATTATATTCAACGAGAT
GCGGAGGCATCCACAGCTCATCGCTCAGATCTCAGCTACGGAGAACACGA
TATTGACCAGGGCGGAACTTCAGGCCAATGCAATGCACATTGCCAGCTAT
ATGCGATCTTTGGGCCTCCTTCAAATGGATATAGTGGGCATTATAGCGAG
GAATACCACCCACATTTCAGCAGTGGCCTATGCCTGCTTCTTCAACGGCA
TTGCCTTTCACTCGCTCAACATCTCATATGAACAAAGTACAATCGAAAAG
CTCTTTAGCATCACCAGGCCAAATATCATTTTTTGTGATGGGGATGAGTT
CGAGAAGGTCCGATCTGCCACGGCACAACTGGATGTAAAGATAATCACCA
TGCGTAATCATCCATCGGGTTCTATAAGGATCGATCAAGTCCTGTCAACT
CCCATTGAGAAAAACTTCCAGCCAGTACGGTTGGAACAGGGCAACGATCA
GACTTTGGCCATTCTCTGCTCCTCAGGCACAACGGGCATTCCAAAGGCTG
TGACAATAACCAACAGCAGACAGATCCTTAATTCCAGTCATTCCTTAACC
ACCAATGACGTTCAATACAGCCACAGTACTCTCGACTGGATTACGGGTCT
GCTTACCACTGTAACATCCGGGGTATTCAGCACCAAGCGTATTATAGCAG
ATAATATCTTCGATCCGGAGTTCTTCATGCGACTCGTAGAAGAGCACCAG
ATCACTTGGATAATTCAAGCGCCCGCGCACATGGCCCATGATGGTCAACT
CTCCCTCGTTCACCACCTCCGACTTGTCGAGCTAAAGGTACTACCTTTTT
GGAGGATCACGGGCTTCAGTAGAGACCCAGCATCGGATCAGGAGTCGCCT
AGCAAGGACTGCTACCACTTTGCCTACGGCTTTACAGACTGGGCAGCATG
TCGCCTTGACTTACCACTTCGATGAAAAGCCGATTCGGTGCGTCGTTTGG
TGGCGGACTAAGCTTAAGTGATCTGTGGAAAAGGGTGAATTCCCTGGACC
CGATGAAGGTGGTGAACTTGGCCTTGGAATGTCAATTAGCTGCTCCATGC
AATTCAGAAAACACCCAAGTGAGAGAACCCATCAACTCG
FMO03071.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11407-RA | 1789 | CG11407-RA | 63..1221 | 35..1186 | 5215 | 97.5 | Plus |
| CG11659-RA | 1705 | CG11659-RA | 51..832 | 35..816 | 1180 | 77.4 | Plus |
| CG6300-RA | 1724 | CG6300-RA | 51..799 | 35..783 | 1165 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19781507..19782022 | 175..690 | 2580 | 100 | Plus |
| 3R | 32079331 | 3R | 19782075..19782564 | 691..1175 | 1685 | 93.3 | Plus |
| 3R | 32079331 | 3R | 19772486..19772948 | 666..204 | 935 | 80.1 | Minus |
| 3R | 32079331 | 3R | 19776544..19777033 | 666..177 | 935 | 79.4 | Minus |
| 3R | 32079331 | 3R | 19781308..19781451 | 35..178 | 720 | 100 | Plus |
| 3R | 32079331 | 3R | 19773042..19773175 | 168..35 | 220 | 77.6 | Minus |
| 3R | 32079331 | 3R | 19777097..19777230 | 168..35 | 220 | 77.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:31:47 has no hits.
FMO03071.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:57 Download gff for
FMO03071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11407-RA | 55..1192 | 32..1165 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:08 Download gff for
FMO03071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11407-RA | 61..1198 | 32..1165 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:16 Download gff for
FMO03071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11407-RA | 61..1198 | 32..1165 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:16 Download gff for
FMO03071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19781306..19781451 | 32..178 | 99 | -> | Plus |
| 3R | 19781511..19782022 | 179..690 | 100 | -> | Plus |
| 3R | 19782075..19782554 | 691..1165 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:08 Download gff for
FMO03071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15607028..15607173 | 32..178 | 99 | -> | Plus |
| arm_3R | 15607233..15607744 | 179..690 | 100 | -> | Plus |
| arm_3R | 15607797..15608276 | 691..1165 | 95 | | Plus |
