Clone FMO03073 Report

Search the DGRC for FMO03073

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:30
Well:73
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCyp4p2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03073.5prime Sequence

1259 bp (885 high quality bases) assembled on 2008-07-09

> FMO03073.5prime
GTATAGCATACATAATACGAAGTTATCAGTCGACATGATGATTTGTCTTC
TGTGGATTTCGGTGGCCATACTTGTGGTCATCCACTGGATCTATAAGGTA
AACAAAGACTACAATATCCTGGCCTTTTTCGCCCGAAGGGTTCAAACCAA
GGATGGCAAACCATTGGACAGCTTAGTGCCCATGATCAAGGGCCGAACTG
TGTTCGCCAACTGCTTCGATCTCTTAGGAAAAGACACTGACCAGGTATTT
ACTCACTTACGCCAGTTGGCGAAGAACAGCGGAGACAGTTATCTGCAGTA
CTCCATGGGGTTTTCCAACTTCAATGTTATAGATGCGCATAATGCAGCGA
ACATATTGAATCATCCTAATCTGATAACGAAGGGTGTAATATATAATTTT
CTTCACCCTTTCCTAAGAACTGGCGTTCTAACAGCGACAGAAAAGAAATG
GCACACGCGACGCAGTATGCTCACTAGGACATTCCATTTGGATATATTGA
ACCAGTTCCAAGAAATCTTTATAGCGGAGAGCTTGAAGTTCGTAAGTCAG
TTCCAAGGACAAAATGAAGTTGTGGTTTCTTTGAAGGACCGCATATCCCG
ATTTACCCTAAATAGCATTTGTGAAACTGCCATGGGAATCAAACTGGATG
AAATGGCAGAGAAGGGCGATCGCTACAGGGCGAACTTTCACATAATCGAC
GAAGGACTTACCAGGCGCATAGTAAACCCGCTCTATTGGGACGATTGTGT
ATACAACATGTTCACGGGACACAAGTACAACGCAGCTCTAAAAGTGGTAC
ACGAATTTTCCAGAGAGATAATCGCAAAACGCAGAGTACTACTTGAAGAG
GAGCTGGAAAATACAAGAGCCACTCAAACGGCTGACGATGATATATGCGT
GATTAGAAAGAACGCTTCGCCATGCTGGACACCTTGATTTGCGCGAAAAG
GATGGACTAATCGACGATATTGGGATTCCTGAGGAGGCGGACCCGCTGAT
GGCTGAAAGTTACGAATACCACATCCATTGGCTCTGGTCTTTGGCCCTAA
TGAAATATGTTCTCTCTTAATGCCGCTGAACATGGAAACTGGTGCTACCA
AAGAGAATCAGGATCAAATTCTGGAACGAACTGGAGCACACCCCTATCTT
AAGCTCACCCTAAGTAAACCTTAGGTGATCTAGGCTACACTTACAGGACC
ATGTGCGCCGTGTATCCCTTCAATTCCCAGTTCTAGGGGCTGCTCAAAAC
AATCTCCTC

FMO03073.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4p2-RA 1777 CG1944-RA 39..1122 33..1125 5010 97.9 Plus
Cyp4p3-RA 1667 CG10843-RA 315..687 315..687 345 74.3 Plus
Cyp4p1-RA 1680 CG10842-RA 358..688 357..687 305 73.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9238489..9238760 623..894 1345 99.6 Plus
2R 25286936 2R 9237550..9237756 33..239 1035 100 Plus
2R 25286936 2R 9237836..9238037 239..440 1010 100 Plus
2R 25286936 2R 9238819..9238970 895..1046 510 94.8 Plus
2R 25286936 2R 9238331..9238431 523..623 505 100 Plus
2R 25286936 2R 9238089..9238173 438..522 425 100 Plus
2R 25286936 2R 9240609..9240684 446..521 185 82.9 Plus
Blast to na_te.dros performed on 2014-11-28 22:14:10 has no hits.

FMO03073.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:04 Download gff for FMO03073.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 12..1111 21..1133 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:15 Download gff for FMO03073.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 30..1129 21..1133 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:46 Download gff for FMO03073.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 30..1129 21..1133 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:46 Download gff for FMO03073.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9238490..9238760 624..894 99 -> Plus
2R 9237837..9238037 240..440 100 -> Plus
2R 9238092..9238173 441..522 100 -> Plus
2R 9238331..9238431 523..623 100 -> Plus
2R 9237541..9237756 21..239 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:15 Download gff for FMO03073.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5125046..5125261 21..239 97 -> Plus
arm_2R 5125342..5125542 240..440 100 -> Plus
arm_2R 5125597..5125678 441..522 100 -> Plus
arm_2R 5125836..5125936 523..623 100 -> Plus
arm_2R 5125995..5126265 624..894 99 -> Plus