FMO03074.5prime Sequence
1252 bp (973 high quality bases) assembled on 2008-07-09
> FMO03074.5prime
CGTATAGCATACCTTATACGAAGTTATCAGTCGACATGTCATGGGAGAGC
ATTAACTCCAAGGATCTCCTTAGCATCCCACCAAGCCAGAATCTGTCTGC
AACACGTTTACTTACATCACCTGATGGATCTCGTTACCTATTGGAAAATT
CAAGCGACTTGTGTCACTTAGATGAGAGTTTTTCGCGGTTGGCGGGATAT
GGATCTAGTCCAGATGTAGGATCCCGTTCGGTATGGGCTAGCCAGGCGCT
ATTACGATCAGGTTCTGTTATCAGTTGCTTTTTGTCCTGCCAGCAAAGCC
TAAGACAGTACATAGCTAAACGGAAGATCGAGCGAGGACGACGGCTATAT
GAACAAAACAATCAAACGGAGGCCGTACGTACTTGGCGTAGTGCACTGAA
AGGGACGTGCCAAAGAGAGGACTGCTTTCAGCTACTAGGATATTTGTATC
AGGCACATATGGACTGGGGAAAATTTCGTGAGGCAATAGAATTCAGTCAT
CAGCAGCTCGGAATTTCAGAGGAGCTTGATTCGCCAAATATGAGAGCCGA
GACGTACTTAAATCTCAGCAGGGCACACGCCAGCTTGGGAGGCTTAGAGC
GATCACTGAGTTATGCCAGGCACTCACTTTACAATGAGTGCGGCACTAAA
TGCAGAAGTGGACTTGTCCATTTGACGGTTGCACGTGTATACCTAGAAAT
GGGTGGGTTCTCTAGGGCTTTGGAGGGTTTGCAGGGTGCCTACAAAATTG
CTACAGCTATTGGAGATCCATCACTGGAGTTACAAGTGTATGTCGCGCTT
TCTGAGCTTTTCGGACGCCTTCAGGATAACGATAAAAGTGCAACATACGC
TTCTAAGCCTACGACTTATCACGATCCCTGCGACTCGGTGACCTAAACTC
ATGCCACCATAGAGCAGCTCTATTGCGAATGGCCGTTTTCTCCTCCGAAG
CATGTGAGCTTGGAAGATGACACACGAATTATTGTAAAGGAGCCACGAAG
CTTTCCCTTATTTCTGGAGACCAGGCGACTACCACGAGAAGTATTTCGCG
TCATGGGGCGACATATAACCGAAATAAAAATGGACATGAATCGTGCCATT
CCCGCAATATGGACAAGCTTATGGGTAACACCCGCCAGCCTTAGGGATCC
GTTGTCCCAATGGCAGCCATATGAATTGAACAGCCTCCTGCCTGGAACCT
CCGTCTACAAAACAGAATCTGGCAAACTGTCCAAACACCCTAAAATTTAG
CA
FMO03074.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1909-RB | 2374 | CG1909-RB | 155..1333 | 35..1221 | 4955 | 95.8 | Plus |
| CG1909-RA | 2401 | CG1909-RA | 182..1360 | 35..1221 | 4955 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 585297..585725 | 511..938 | 2065 | 99.3 | Plus |
| 4 | 1348131 | 4 | 584988..585174 | 325..511 | 935 | 100 | Plus |
| 4 | 1348131 | 4 | 584761..584931 | 156..326 | 855 | 100 | Plus |
| 4 | 1348131 | 4 | 583933..584018 | 71..156 | 430 | 100 | Plus |
| 4 | 1348131 | 4 | 585843..585927 | 992..1079 | 260 | 94.3 | Plus |
| 4 | 1348131 | 4 | 583825..583863 | 35..73 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:10:33 has no hits.
FMO03074.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:47 Download gff for
FMO03074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1909-RB | 110..1017 | 28..933 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:15 Download gff for
FMO03074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1909-RA | 174..1081 | 28..933 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:02 Download gff for
FMO03074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1909-RA | 174..1081 | 28..933 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:02 Download gff for
FMO03074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 585840..585940 | 990..1094 | 91 | | Plus |
| 4 | 585298..585772 | 512..989 | 97 | -> | Plus |
| 4 | 583817..583863 | 28..73 | 93 | -> | Plus |
| 4 | 583936..584018 | 74..156 | 100 | -> | Plus |
| 4 | 584762..584931 | 157..326 | 100 | -> | Plus |
| 4 | 584990..585174 | 327..511 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:15 Download gff for
FMO03074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 604443..604489 | 28..73 | 93 | -> | Plus |
| arm_4 | 604562..604644 | 74..156 | 100 | -> | Plus |
| arm_4 | 605388..605557 | 157..326 | 100 | -> | Plus |
| arm_4 | 605616..605800 | 327..511 | 100 | -> | Plus |
| arm_4 | 605924..606398 | 512..989 | 97 | -> | Plus |
| arm_4 | 606466..606566 | 990..1094 | 91 | | Plus |
