FMO03075.5prime Sequence
1256 bp (1019 high quality bases) assembled on 2008-07-09
> FMO03075.5prime
CGTATAGCATACCTTAAACGAAGTTATCAGTCGACATGAGTTTCCTTGAC
GTTCGTTGCTTCGGAAAATCCATCGCAAGAAAACTGAAAAGAGCGTGCGA
AAGCAGAAAGGCCAATTTTTCACCCGAAAGTTATATACCGCATCCAGTTG
AAATGTCCGCCAAGACGTCGCCATCGTCCACTTCTCGGGATGCCAACGTG
GGATCCTCGAGTGCGATTCCCGTTCAGATCAAAAAAGAACTGCCCAGCGA
TGAGATAAAGGAATTCGCGCACAACACCATGAACGAGCTGCTCGGCTGGT
ATGGATTCGAGGGTGTGGATGTGGATCGTCTCGACCTGACCGCCAAAACG
TCGCGCCTGCTGCAAAGTGCCGCCGCCGCAGCTGTGGCCAATCAGCAGAG
CCACCAGCTTCACCAGTTGGAGCCGCATCCGAATCTGGAGCGGAAGCGGA
CCAGTCTGCTTCGCAGTAGCAGTCGCAGTTCCTTGGCAGCGGCCTACCAC
AACAACAACAACAACAATAATAACAACAACAACGGCAGCAGCAGCAAGAA
CAACGGAGGAGTCGGCGGCGTAGGCGTTGGGAGTGGTCGGAAGAGCGGGT
TGATGAACTGCAGCAGCACCACCACCACGCCATCGGACCACGACACGCGA
AGCTCACGGGAGGAGGATTCCAAGAGTCCGCACTCCATCGGGAAGCCAGC
GGGAGCTGCGCACACGGATGAGAAAATAGACTTCAGCAATTGCTGCTGGT
GCCATCGACCGATTGCGGAGAATGCGCCCGGACTACCTGACCAGCTGCGA
CGGACCGCGCTACTGCTCCGAATCCTGCTTCGCCCAGAGCCGGGAGGGCA
TCCTTCAAGAAGGCCAAGACCTGCGACTGGGTGCAAGCATGTGCGCCACG
CGGTTAGCTACGTGGACTTTCAGGACGGGCGCCTCCCAGCTACAGTTCTT
GCTCGGAGAAGTGCTCAACCAGTCACAGATGCAGATCTTCTGCCACGAAC
CCAGGCGCACTGGAACATGGCATCCGCACACTGGCGGGATCAGGCCATGG
ATGCCGGGCAGCGAAGGCTGGGGCTGATAACCGCCCGGGATCTGTGGCTT
CCAAACTGCAGGAATCGCTCGGGCCTCGCCCGCCTCCACGCTCCTCGGGG
TCTCCGGTCCCCCGCCCTGTCTCGGGTGTCAGTCGTTCCGGAACTCACCG
CCTAGCTACTATTCCAGCAACTTTGATATCCTCAGGTGGGCACCCGCTGC
TGCTGT
FMO03075.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sobp-RB | 2823 | CG8991-RB | 191..1372 | 35..1227 | 5110 | 96.6 | Plus |
| Sobp-RA | 3104 | CG8991-RA | 472..1653 | 35..1227 | 5110 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11829968..11830438 | 729..259 | 2355 | 100 | Minus |
| 2R | 25286936 | 2R | 11828666..11829109 | 1185..728 | 1175 | 91.3 | Minus |
| 2R | 25286936 | 2R | 11837895..11838038 | 261..118 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 11839272..11839354 | 117..35 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:30 has no hits.
FMO03075.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:28 Download gff for
FMO03075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sobp-RA | 174..1349 | 30..1220 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:42 Download gff for
FMO03075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sobp-RA | 188..1363 | 30..1220 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:47 Download gff for
FMO03075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sobp-RA | 469..1644 | 30..1220 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:47 Download gff for
FMO03075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11828630..11829107 | 730..1220 | 92 | <- | Minus |
| 2R | 11829968..11830436 | 261..729 | 100 | <- | Minus |
| 2R | 11837896..11838038 | 118..260 | 100 | <- | Minus |
| 2R | 11839272..11839357 | 30..117 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:42 Download gff for
FMO03075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7726777..7726862 | 30..117 | 97 | | Minus |
| arm_2R | 7716135..7716612 | 730..1220 | 92 | <- | Minus |
| arm_2R | 7717473..7717941 | 261..729 | 100 | <- | Minus |
| arm_2R | 7725401..7725543 | 118..260 | 100 | <- | Minus |
