FMO03076.5prime Sequence
1221 bp (853 high quality bases) assembled on 2008-07-09
> FMO03076.5prime
CTTCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGGCCAAGATA
AACCTACTGCGACACCTCTTCCTGGCCCTAATGCTGTACAGTGCGGCCAC
GGCCAAGGAGCACCTGCGAATCCGAAGACAGGCTGCGGAATCGGTGACTG
CCGCAGCTCCGAATGCCAGTAAGGTGATGGCCTCCGAGGAGATTAAGGAC
AAGACAGAGTGGCCCGGCGCCAAAGAAACCTCCACCGAAATCAATAGGAC
TGAGAGGCCCGTAGAAAACGTGGAGACCCGCAACTCGGGCTTCGACTTGC
CGGCCGCCTCGGATTTGTCCAGCTCTCTGGGTTCCGAGGAGGATAGCATC
TACTACGACAATGCTCCCGTGGACTGCAATCCCGAGCTGGTGGGCTTTGA
AATTGTGACAGGATACGTCTTCTCGGCGCCCGAAAAGCTGATGGACTCCC
AGCCGGGCACGCTAATGCTCACTGATTGCTTGGACACCTGTAGGAAGAAC
AAAACCTGCCAGTCAGTGAACTACGAGACCGGGCTTTGCGTGCTCTTCTC
GGCACATGCTGATCAATTACCGGGTGCCCTGACAAAGTCGCAGTTCCCCG
TATTCACTATCTATGCCCAAAAATCATGCCTGGCCGTGAAGCCCTGCTCC
CGAGCCTGGTACGTCGATCGTGTTCACAACTACAAGCTCAAGACGGAAGT
TAAGCGTACCGTGTCGGTGGCGTCAAGACGCGAGTGCTTTGAACTCTGTC
TCGGCGAAACGACTTCACATGCAGATCTGCCAACTACGATCGCACCTCTG
GAGCTTGCGAGCTGAGCGACTGAATCGCCTGACTCTGGCCAGCTCCCATG
CCTTTCTAGGTGAACGATGGGTCGGATTACCTTGAAAATCACTGTGTCGA
TGAACCAACCAAGCTCTGCGAATTCAAACGTCTACCTGGTCCTCAATCTG
AAGACGATCGACTCCGGTTACTAGCAGTGGAGCAGCATTGACGAGTGCCA
GGTACTGTGCCTAACTCCCCATTATAGGTGTCATTCGTACGACTACACGA
CACGGGTGACATGGTGTGTAGATTATTCCCTATACAGATCTTGCCACCTT
GACGAGTGCCAGAACCATCTGGAGGTCCGAGGTCTCCACTATGACCTGAC
TCCTGCTTACTGGACTTCAGGCGCGGGTGGTAATGCTGTCGATCCTCGCC
GAAGTCATACAGACAGAGGTA
FMO03076.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| neo-RB | 3005 | CG7802-RB | 201..1326 | 39..1157 | 4710 | 95.5 | Plus |
| neo-RA | 2977 | CG7802-RA | 173..1298 | 39..1157 | 4710 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29822381..29822754 | 39..412 | 1870 | 100 | Plus |
| 3R | 32079331 | 3R | 29823039..29823241 | 573..774 | 935 | 98.5 | Plus |
| 3R | 32079331 | 3R | 29822819..29822982 | 412..575 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 29823373..29823611 | 773..1012 | 740 | 90 | Plus |
| 3R | 32079331 | 3R | 29823767..29823818 | 1026..1076 | 195 | 96.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:39:13 has no hits.
FMO03076.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:40 Download gff for
FMO03076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7802-RB | 220..1281 | 39..1101 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:24 Download gff for
FMO03076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neo-RA | 173..1234 | 39..1101 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:42 Download gff for
FMO03076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neo-RA | 173..1234 | 39..1101 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:42 Download gff for
FMO03076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29822381..29822754 | 39..412 | 100 | -> | Plus |
| 3R | 29822820..29822980 | 413..573 | 100 | -> | Plus |
| 3R | 29823040..29823241 | 574..774 | 98 | -> | Plus |
| 3R | 29823375..29823626 | 775..1027 | 90 | -> | Plus |
| 3R | 29823769..29823818 | 1028..1076 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:24 Download gff for
FMO03076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25648103..25648476 | 39..412 | 100 | -> | Plus |
| arm_3R | 25648542..25648702 | 413..573 | 100 | -> | Plus |
| arm_3R | 25648762..25648963 | 574..774 | 98 | -> | Plus |
| arm_3R | 25649097..25649348 | 775..1027 | 90 | -> | Plus |
| arm_3R | 25649491..25649540 | 1028..1076 | 96 | == | Plus |
