FMO03078.5prime Sequence
1260 bp (950 high quality bases) assembled on 2008-07-09
> FMO03078.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCACCAACC
GGACATATATCCAAATCAAAGACGCCCACGCCACACGATAACGATAACAA
TAGCATCAGCGACGAGCGCGAAACATGGAGCGGCAAAGTGGATTTTTTAT
TATCGGTTATTGGATTCGCCGTCGATTTAGCAAACGTCTGGAGATTTCCC
TATTTGTGCTACAAAAATGGCGGTGGCGCTTTTCTTGTGCCCTACGGCAT
TATGTTGGTGGTCGGTGGCATTCCTCTGTTCTATATGGAATTGGCCCTGG
GTCAGCACAATCGTAAGGGTGCCATAACCTGCTGGGGTCGCTTGGTGCCC
CTCTTCAAAGGAATTGGATATGCCGTGGTGCTGATAGCCTTCTATGTGGA
CTTCTATTACAATGTGATTATTGCCTGGTCGTTGCGTTTCTTTTTTGCAT
CCTTCACCAACTCGCTGCCTTGGACGTCGTGTAATAATATTTGGAACACA
CCAAATTGTAGACCGTTTGAGAGCCAAAATGCATCTCGTGTTCCGGTTAT
TGGTAACTATAGTGACTTGTATGCCATGGGAAATCAAAGCCTGCTCTACA
ATGAGACATATATGAATGGTTCGAGCTTGGATACGTCAGCGGTTGGCCAT
GTGGAGGGTTTTCAGTCCGCAGCATCGGAATATTTTAACCGCTACATTTT
GGAGCTGAACCGCAGCGAGGGAATCCATGACTTGGGCGCCATCAAATGGG
ACATGGCGCTGTGCCTTCTGATTGTCTACTTAATTTGTTACTTCTCCCTG
TGGAAAGGTATCAACACTTCGGGCAAGGTTGTGTGGTTTACTGCCCTCTT
TCCCTATGCAGTGCTACTGATTCTTCTAATCAGAGGGCTCACACTGCCGG
GATCTTTTCTGGGCATTCAGTATTATCTTACGCCCACTTTAATGCCATCT
ATAGGCTGAAGTCTGGGCTGGATGCTGCCACCAAGTGTTTTTTCTTCTTG
GGTCCAGGAATTGGAGTGCTGCTGGCCTATGCCTCCTATAATAAATACCA
TTACATGGATACAAGGATGGCTTTGATAACCAGTTTCATTAACTCCGGCC
TAACAACTTTATAGCCAGCCTTTGGGATATTTCCTCCGCTGCGTGGCTAA
CATGCCACACACGGGATGATAAAAATTGAAATGTGCCACGACGACCTTGC
CTGTTCCTGGTCTACACACATGCACTGTGCAACCCAGCGCGCCCACACTC
TTTTCTTCGC
FMO03078.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DAT-RB | 3040 | CG8380-RB | 324..1471 | 39..1189 | 5025 | 96.5 | Plus |
| DAT-RA | 3040 | CG8380-RA | 324..1471 | 39..1189 | 5025 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16560384..16560751 | 1055..689 | 1500 | 95.7 | Minus |
| 2R | 25286936 | 2R | 16563770..16563957 | 226..39 | 940 | 100 | Minus |
| 2R | 25286936 | 2R | 16560809..16560982 | 688..515 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 16561043..16561199 | 515..359 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 16561261..16561397 | 361..225 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:32:15 has no hits.
FMO03078.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:06 Download gff for
FMO03078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DAT-RA | 333..1423 | 28..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:17 Download gff for
FMO03078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DAT-RA | 313..1403 | 28..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:33 Download gff for
FMO03078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DAT-RA | 313..1403 | 28..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:33 Download gff for
FMO03078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16561043..16561197 | 361..515 | 100 | <- | Minus |
| 2R | 16561262..16561396 | 226..360 | 100 | <- | Minus |
| 2R | 16563771..16563968 | 28..225 | 98 | | Minus |
| 2R | 16560281..16560310 | 1065..1095 | 93 | <- | Minus |
| 2R | 16560374..16560751 | 689..1064 | 95 | <- | Minus |
| 2R | 16560809..16560981 | 516..688 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:17 Download gff for
FMO03078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12448548..12448702 | 361..515 | 100 | <- | Minus |
| arm_2R | 12447786..12447815 | 1065..1095 | 93 | <- | Minus |
| arm_2R | 12447879..12448256 | 689..1064 | 95 | <- | Minus |
| arm_2R | 12448314..12448486 | 516..688 | 100 | <- | Minus |
| arm_2R | 12448767..12448901 | 226..360 | 100 | <- | Minus |
| arm_2R | 12451276..12451473 | 28..225 | 98 | | Minus |
