FMO03080.5prime Sequence
1233 bp (994 high quality bases) assembled on 2008-07-09
> FMO03080.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGGGTCGAGGAG
GCGACCTATAGGCGCACCACGCGCGAGAAGATTGTGCTGCGAGGGAACAC
CACCATACGCACCGTGGACTCCACTTCCACATACCTGCCCGTGATGAGTC
CTGCGGGCTCTTCCACACCTCCGACAAGCCTGTCGCACATGGCCCGGATG
ATGGACTCCCTGATCCTCGACTCGCTATCCCCATTTGGCTTCACGAAGAT
CACGGCCACCAGTCGACCTTCCCGGAACGCCAGCTTGAAGAAGAGCTCGG
AAGGCGGCCACTCCTCGACAGCAGAGCGCCACCGGCCCGTCAACAACCTG
GGCTCTAATGCACCTGGGGGATTGGGCATTGGCGGAAGTGTTCCGTTGCG
CAGCAAGCAGCGGCTACCCACGCAAGAAGTGGCACCACAACCGCGAGCCA
GTCAGACGGCCCAAATGCCATTTCCGTCGCAGCAGCAGGATAATCGGTGG
GTGTCCTCCCTGCGTCGGCGGGATCCCGAGCTGCAGCCCACTTTACCCTC
CATCAACAGCAATGCGAACAGCAGCAGCCTCAGCCAGAGCCACCACGGAA
GTGCTGGGAACGTGGGATTGGCGGGCGCAGGAGCACCTACACCCGCCGCC
AGCATGGGCACAATGCGCCTGGGGCGACCAGCAAGGGCATCCGCCATGAC
CGCCGCCTTGCGGAAGAGCCGATCCGTGGAGCGCCTGCGGGCCAGGAAGC
TCAGCACAAACACCCAGCTTAACTTGAAGCACAAGCCGGTTAAGAAGAAC
TCGCTGGACGAAAACTCCAACTCGGATGACAAGACGCCACCACATCCCTG
GAAGACAACTCGCACGCCCAGTCCCTAGCCACCAGCCACAACACGGCCCA
AATGCTCACGAAGACCAAGGCCAAGCACTTCTCGGCCTTGGGCTACGAAG
GTCATCTGGTGACACCCTGAAGAAGGACATTCTGCAGCGCCATCCGTGCA
TCAAGTGGACGATGTTGCTGGCCTCATGAAGCCAGAACAATACCTCCAGG
AAGCAGTGGTGCTCCGGTATCATGCTGGAGTTCTTCCAAGGGAATCCGCC
CGGGCTGGCATGAATGTTGATGTCCGTTCCGTCGGAACGCGAAACCATGT
CTGGCCAAGCCGGTGCCCAAATGGAACCACTTCTCCACGTTCTCTCTGAC
CCTGAACCTCAAATTACCAAGAGAAAAAGCGCG
FMO03080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kat-60L1-RF | 2172 | CG1193-RF | 139..1279 | 36..1169 | 5015 | 96.8 | Plus |
| kat-60L1-RA | 2301 | CG1193-RA | 139..1279 | 36..1169 | 5015 | 96.8 | Plus |
| kat-60L1-RH | 2313 | CG1193-RH | 139..1291 | 36..1169 | 4885 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5785440..5786044 | 425..1026 | 2690 | 98.2 | Plus |
| 3R | 32079331 | 3R | 5785112..5785381 | 157..426 | 1350 | 100 | Plus |
| 3R | 32079331 | 3R | 5781900..5782021 | 36..157 | 610 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:52:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3243..3321 | 516..596 | 120 | 64.2 | Plus |
FMO03080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:13 Download gff for
FMO03080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1193-RA | 133..1219 | 29..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:26 Download gff for
FMO03080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kat-60L1-RA | 133..1219 | 29..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:43 Download gff for
FMO03080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kat-60L1-RA | 133..1219 | 29..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:43 Download gff for
FMO03080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5781894..5782021 | 29..157 | 97 | -> | Plus |
| 3R | 5785113..5785381 | 158..426 | 100 | -> | Plus |
| 3R | 5785442..5786067 | 427..1049 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:26 Download gff for
FMO03080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1607616..1607743 | 29..157 | 97 | -> | Plus |
| arm_3R | 1610835..1611103 | 158..426 | 100 | -> | Plus |
| arm_3R | 1611164..1611789 | 427..1049 | 97 | -> | Plus |
