FMO03081.5prime Sequence
1260 bp (907 high quality bases) assembled on 2008-07-09
> FMO03081.5prime
TCGTATAGCATAATAATACAAAGTTATCAGTCGACATGATGACTTCGCCA
CGAAATCACATCGGAACCCTTCTTGTCGTCTGGCTACTGGAGTTCTCAAT
GGTGATTAGCCAGACTGACACGGGCAATGCATTGATGGATATGCTCGAGA
TCTATCGTCGCGGTCAGGCGCAATTGGATCTGGAGAATCTGGACGAGGGT
CAGGTCATAACGACGAAATATGATTTCATAGTGGTTGGTGCCGGCACAGC
TGGTTGTGCCCTAGCCGCGCGACTCTCCGAGAATCCCCGGTGGCGAGTGC
TACTCCTGGAGGCCGGTGGTCCCGAGAACTATGCCATGGACATACCAATT
GTGGCGCATCTCTTGCAGCTGGGCGAAATCAACTGGAAGTACAAAACGGA
GCCATCGAATAGCTATTGCCTGGCCATGAACAACAATCGCTGCAATTGGC
CCAGGGGCAAGGTGATGGGTGGCAGCTCGGTGCTCAACTATATGATGTAC
ACCAGGGGCAATCGCCGCGACTACGATCGCTGGGCACGTTTGGGCAATCC
GGGCTGGAGTTACGAGGAGGTACTACCCTATTTCAAGAAGTACGAGGGCA
GCGTAGTGCCGGATGCCGATGAGAATCTGGTGGGACGCAATGGGCCGGTG
AAGGTGAGCTACTCGGAGACGAGGACTCGCATCGCAGACGCCTTTGTGGG
AGCCACCCAAGATGCAGGATTGCCGCGAGGTGACTACAATGGAGATAAAC
AGATTCGTGTGTCCTATCTGCAGCGAATATCTACAATGAGACCCGTTGGA
GCTCCAATCGAGCGTATCTGTATCCCATTAAGGGAAAGCGTCCAAATCTT
CATGTGAAGAAGAATGCCTTTGGTTTACCAAATCTTTGAATTGATCCGAG
ACGAAATTCGCTGTTTGGTATAATCCTCCAAAATGCGATGGCAAAATGCA
AAATATTTTGTGCAAAAAAGAGGTCATTCTATCGGCGGGTGGCATTAATA
CACCCCAGCTACTGATGCTCCTCGGCGGGGGACCTGCTAACATTTGCGGG
AAAGGGCAATAAGCCACTGGCCGATCTGGCCGTTGGCTACAACCTCCAGA
ATCACATAGCTCGGCTTATCCCTCTCGTGATAGTGGAGTCGCTTGCAACT
ATCTGAATGTTTCCGCTTCGGAGGTCATGTCTAATTTCCTGAACGTTAAC
CTGTAATAGTCTCCCCTCAATCGGGGGGTGATGTGAAGTCCATACATCAT
CTCAGTACAC
FMO03081.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9519-RA | 2034 | CG9519-RA | 58..1133 | 35..1112 | 4830 | 97.1 | Plus |
| CG9521-RA | 2265 | CG9521-RA | 325..767 | 219..661 | 1105 | 84.1 | Plus |
| CG9518-RC | 3952 | CG9518-RC | 1327..1460 | 432..565 | 235 | 80.1 | Plus |
| CG9521-RA | 2265 | CG9521-RA | 1048..1210 | 946..1106 | 195 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14855229..14856304 | 1112..35 | 4585 | 96.9 | Minus |
| X | 23542271 | X | 14852503..14852945 | 661..219 | 1090 | 83.1 | Minus |
| X | 23542271 | X | 14865481..14865614 | 565..432 | 235 | 78.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:45 has no hits.
FMO03081.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:14 Download gff for
FMO03081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-RA | 56..1147 | 31..1126 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:58 Download gff for
FMO03081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-RA | 56..1147 | 31..1126 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:32 Download gff for
FMO03081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-RA | 56..1147 | 31..1126 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:32 Download gff for
FMO03081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14855215..14856306 | 31..1126 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:58 Download gff for
FMO03081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14749248..14750339 | 31..1126 | 96 | | Minus |
