FMO03082.5prime Sequence
1259 bp (1055 high quality bases) assembled on 2008-07-09
> FMO03082.5prime
TTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGATTTCAAAAG
CACTGGCCGTCCTGTGGATAGCTGGCATCGCCTACGGCCAGGACGATCTG
CTCAGGGTGGAAACCGAATTGTTGAGCTTCTCTCACAACCTAGAGCCGTA
TCTCGACACCAGCAAGCAGCCCTGCCAGGACTTCTACGGTTATGTCTGCT
CGCACAGCGCCAACCTCAGCGAGACTGGCAGGCAGCGATTCCAAAGCTTG
CTTAAGGAAACGGACGTGGCGCAGCTGATGGACATGGAACTCCAACTGAT
AAACTTCTTCAAGTCTTGCGAGAGCGGGCGTGGCGTAGAGGCGCTCAAGG
GATCTCAATTGTATAGGCAGAGTGGGGGCTGGCCTAGCTTGGAACCGAAC
AAAGTCAATGCCAGTCAGCGGACTAACCAAACCCAAAGATGGCTGGGACT
TCTTGGGTACTTCCACGAAGTGGGCGCGCCCTATTTCTTCGAGACGTCGG
TCACCATGCAGTCCAACAAGCGACTTGTGGTACTGCAACCCGACGGCACG
CGCCGAAACACTCTAAGAAAATTCGAGCAGCGGGTGGGCGAAGTCCTGCA
AAGCTTCGGGATAGAACAGAGCCGCGCCCACGTGACCGCCCTCGAAGTGC
TCAGCTTGGAGCGCAGTAGACGGGACATTGTAAAGGCGGATCACGTCGAG
GATCAAGTGCAGTTTTCCTATGGAAACTTTAAGCGCATCGTCTTCGGAAA
CGCCTCGCTGATCAGACTGGACTGGGATGGCTACTTCCGCAAGTTGCTAG
GCGGCAAAACGCCACAGGCCAGCGACACCATTGTAGTCAAACAACTGCCC
AGACTGGGTTGAGTACTTCGCGCTGCTCCAAAACACAAGCATGGTTCGAC
TTCTTAATTGGATATGGACGGACTACTTGATGGACATCGTAGATGCAGAC
TGCCATCAATTATCGGAAACCTACGCCGGGGACTTTACGCCCACGTAGTG
CACGTGTTACGGCAAATCGAGTCGAACTGGCCCAAATGTACTCGGAGCTG
GGAAAGGCCTAACCCGACCAGCTAGGCGCAGTGGTGTGGATCGATGAGAT
CTCTCTAGGCGAGCTCAGAGACAGTTTTGGATTACATATTCCACACCCTA
CGCCTGAATGGAATTGAGCGAATTGGGACCCGCATACCACTCGGAGTTGT
TTGGCTCGCCGGATCTTTAACGAACTTGTGAAGAGAGTTCGCCGGATGTT
CATGCAGTC
FMO03082.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9780-RA | 2182 | CG9780-RA | 194..1345 | 38..1193 | 5265 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4293753..4294647 | 933..38 | 4430 | 99.9 | Minus |
| 3R | 32079331 | 3R | 4293195..4293368 | 1104..933 | 635 | 93.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:17 has no hits.
FMO03082.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:03 Download gff for
FMO03082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RB | 182..1257 | 30..1104 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:33 Download gff for
FMO03082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 186..1261 | 30..1104 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:41 Download gff for
FMO03082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 186..1261 | 30..1104 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:41 Download gff for
FMO03082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4293195..4293367 | 934..1104 | 95 | <- | Minus |
| 3R | 4293753..4294655 | 30..933 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:33 Download gff for
FMO03082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 118917..119089 | 934..1104 | 95 | <- | Minus |
| arm_3R | 119475..120377 | 30..933 | 99 | | Minus |
