FMO03084.5prime Sequence
1266 bp (985 high quality bases) assembled on 2008-07-09
> FMO03084.5prime
ACATTATACGAAGTTATCAGTCGACATGTCCAGTTGGAGTTTGGCCAGTG
CCGTGTCGCCAAATGTCACCGGTGGCGATGTCATCCGGTTGAACCACCTA
AAGTCCAGCTCGGAAACGCATCTGCCATCGCGGGGATCTGGAACGGGGTC
TGGAGCACTACCACGTCCCACGACACCCGTGCCCTCCAAGAAACTGTCGT
CCAAACGACCTCCACACTTGACCCTCAACATAAAGGCCAAGTCCCACGAT
GCTCCGCTGGCCGAGACGGAAAACACGGTTCTCTCGACCAGTGAATCTGT
CTATGGAACTCCGCTGGGCGCCACACCCGTTTCGTCACCTGCCAACCAAA
GTCAGCGCAGTCAGGCGAGCCAGCATAGTGACGAAAGCCGCAACACCAGC
AGCACCGCCACCAGCGGAGGATCCATATTCCCCCACGAACAGTACAAAAC
CATCAAGAAGATCAACATTGGCTTCGAGAATATACGCTACACTACCAAAT
TCGGAGTCTTCCAGAGGGAAACCAAGGATGTGCTAATGGGTTTAACGGGC
TACTTCAAGTCGGGAGAACTTAGTGCCGTTATTGGACCCTCTGGAGCTGG
AAAGAGTACTCTGCTCAACATTCTGTCAGGATACACAACATATGGCTTTA
CGGGGGATTTCCGGGTCAATGGCAACAGGCGGGATTTAAAGGCCTTCAAG
TCGAACGTGGCGTTCATCCGCCAGGATACGAGTCTTCAGGCCTTTCTCTC
CGTCAAGGAGGCGATGCATTTTGCAGCCAATTTGAAAATCGGCACTCACA
TGACACATAGCGAGAAAAGAGAGCGGGTAAAGTGCATTCTGGGAGGCCAT
CGGTTATGTACGAAAACCCGGCATACCAGGACGGGCAGCTAATTGGTAGG
TCAGAAGAATCGTCTTGCTATTGCACTGGGAACTGGTGAACAACTCGACC
GGTGCTGATCCTGGACGAACCTACAACTGGCTTGGATGTTTCACCTTCAA
TCAGCTGATAAATTTGCTAAAGAGCTCGGCCATCGAAGGGACGCACAGTC
ATTCTGCACATTCACCAGCTACGTTGCCTTGACCTTTCCTCATGTTCGTA
TACTCTGTTTTGCCATTGGGCTGAGGTCCATGTGTATCTCACGATGGAAA
GAGCCTAAAACCTTATTGCCCCTCTCTGGGGTCCTCAATTGACATGTCGC
GGAAATCCTTAATCATCAGGTGAGCGTAATATTACTTATATAGTGGAATT
AGCATACCTACCTAAT
FMO03084.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9663-RA | 3062 | CG9663-RA | 220..1373 | 22..1190 | 4930 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3301123..3301619 | 518..22 | 2485 | 100 | Minus |
| 2L | 23513712 | 2L | 3297053..3297388 | 977..637 | 1315 | 97.1 | Minus |
| 2L | 23513712 | 2L | 3297447..3297565 | 636..518 | 595 | 100 | Minus |
| 2L | 23513712 | 2L | 3296920..3296994 | 1052..978 | 190 | 89.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:59:52 has no hits.
FMO03084.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:38 Download gff for
FMO03084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9663-RA | 212..1266 | 10..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:07 Download gff for
FMO03084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9663-RA | 213..1291 | 10..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:38 Download gff for
FMO03084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9663-RA | 213..1291 | 10..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:38 Download gff for
FMO03084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3297053..3297388 | 637..977 | 97 | <- | Minus |
| 2L | 3297447..3297564 | 519..636 | 100 | <- | Minus |
| 2L | 3301123..3301626 | 10..518 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:07 Download gff for
FMO03084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3297053..3297388 | 637..977 | 97 | <- | Minus |
| arm_2L | 3297447..3297564 | 519..636 | 100 | <- | Minus |
| arm_2L | 3301123..3301626 | 10..518 | 99 | | Minus |
