FMO03086.5prime Sequence
1221 bp (1010 high quality bases) assembled on 2008-07-09
> FMO03086.5prime
CGTATAGCATACATAAAACGAAGTTATCAGTCGACATGGCTAAGAAAATA
CCTTTTAACGTGGTGTTCGCCTCAGACGAGGATGTTAACTTTCCGGCTAG
CGAGTTAAACAATCACGGCCCCACAGTTCACGGATGGCGAAGTGCTCCGA
ACGGCAGCCTCACCTCACATGACATCATCCTCCGATTCCAGCAGCCGGCC
AAGATCTATCGCATCCAGCTCCTGGCACACCAGTATCTTATACCTGAGAA
AGTAGAACTCTGGCTGCACTACTCGCCCAAATCCCTGCCCAGCACTCCAT
CCTCGCAGTACTTTGACTTTTTGGGTTTTGTTGCCCTGGCGGATAATGCC
AACACGAACTACAAGTCTCGGGAGCTGCAGAGCGTAACCGTGTGTCCACG
TAGGGGCACACATCTTAAGCTGCGTCTGATTGGCGTCCAAGGAAACGACT
ACAATGACACAGGCCAGATTTCCCTACTAGCGGTAAATGTCCTGGGCGAG
GATCTGGAAGTGGGGCCAAATAATGGCAACGGAGAGGAGCACTTGGCCAA
CGAGGCCCCACCGTTGGACACGGCCACCGGAGAACTGGCCCTGGCCTCCG
TCTGTGATGACCTGCTTTTCTCCATGTATGTGGAGGAGTCAATAGTGCAG
ACCATCCGAGAGTTGGAACAGCGAAAGATTTTGGCCGTTAACTCAGAAAG
ATTCGAGTACGCCCGCAAACTGAAGCTATGCATGACAGCTTTAAGGACTG
CCGGAGAACGTTTGGGGCGCTATGCTCTGGCCAAGAGGCAGGCTGTTCAG
CAGAGGACTTTACCACGGCCAGGCTACGCAAGGAGCAGATCGAGATGTAC
CGGGCGGCAGTACTTCGACAATTGCAGGTGCATCAGCTTCTGGAACCGCA
GGTGTGACCTTTAGCTCCATTGACCAAGCTGCCAGATCTATGCGGTGGGA
AGCCCAGTCTGCATCGGCTCTAGCCTGCAAGATGTGCACAGGCACTTGCG
AAGCCACCTTCAGTCCCAGAGCCATGACGAGTCCTCAGCTTAGAGGACAA
TCCTCGACCGATGGCTCCAGCTGGTACGACAATAACGTTGACCGTCCGAC
CTGCTCAGCACCGGTCCCTGGCCCACTCTTGCAGCCACGCCCCACTCCAG
CTGGGGCTGCAAGTCCACTAACACGTGCTATCGCACTTGCTTGCCCTTCC
AGGACACAGTCTTCTCACCCA
FMO03086.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10137-RA | 3227 | CG10137-RA | 81..1216 | 30..1148 | 4950 | 97 | Plus |
| CG10165-RD | 1440 | CG10165-RD | 366..537 | 243..72 | 860 | 100 | Minus |
| CG10165-RB | 1342 | CG10165-RB | 268..439 | 243..72 | 860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19529094..19529926 | 244..1068 | 3550 | 97.8 | Plus |
| 2L | 23513712 | 2L | 19528774..19528945 | 72..243 | 860 | 100 | Plus |
| 2L | 23513712 | 2L | 19526766..19526811 | 30..75 | 215 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:30:18 has no hits.
FMO03086.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:17 Download gff for
FMO03086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10137-RA | 81..1160 | 30..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:43 Download gff for
FMO03086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10137-RA | 81..1160 | 30..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:27 Download gff for
FMO03086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10137-RA | 81..1160 | 30..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:27 Download gff for
FMO03086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19526766..19526811 | 30..75 | 97 | -> | Plus |
| 2L | 19528778..19528945 | 76..243 | 100 | -> | Plus |
| 2L | 19529094..19529959 | 244..1098 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:43 Download gff for
FMO03086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19526766..19526811 | 30..75 | 97 | -> | Plus |
| arm_2L | 19528778..19528945 | 76..243 | 100 | -> | Plus |
| arm_2L | 19529094..19529959 | 244..1098 | 97 | | Plus |
