FMO03087.5prime Sequence
1250 bp (1031 high quality bases) assembled on 2008-07-09
> FMO03087.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTGCGACGGT
GAAATTGGCGATCCGGTGACTCAGCCACGTTCCGAGGGCGGTGGATTGGT
CACAATGGATCAGGAGACCCGGACGCACTACCTCGACGCGGCGACAGATA
AGCACCTGACCAATGGATCGCCAGATCCAGAGCCCGTGGATCCGCTACTC
GTGGCCCAGTGGTCCATCGAGAATGTGACCAGTTGGGCCACCTGCATGGA
GCACTTTTCGAGAACACTGCTCGACTGCCTGCGCCAGGAGGCCATCGACG
GCGAGGTGCTGCTCTCCCTCACCGAGGAGGATGTACGTGATATGCGCTAC
AAACTGGGCTACAAACTCACCTTCGGCGAGCTCAAGAAATTCTGGATAGC
CGTGCTCAAGCTGCAGCTACTGGTGAAGAACAGCTCTGCGGAATCCGTAA
TACTGGGCATCGAGTGCCATGGGAACGGGAACTCGGTATACATGCCACTA
GCCAGCACCGGCTGCGGTCCACCGTCCTCATCCACGTGCCCCTGTCCGCA
GGCCGAATGCCCCAGCTATGTGTCCGATTGCGATACCTATTTGCGCATGG
GCGGACGCTATGTTCCGCCGGAATACTTCAAGACCGCCATGAGCTTAGGC
TACTCGTTCGTTGTCACCTGGATAACATCGTTAACAATGGTTATTGTGCA
CGAGCGGGTTCCGGATATGAAGCGCTATCCGCCGCTGCCGGACATCTTCC
TGGACAACGTGCCGCATATTCCGTGGGCCTTTTAATATGTGCGAAATAAC
CGGCTCACTATTGTTCACCATTTGGGTGGTCGTGCTAACCTTCCACAAGT
ATAGATTGGTCCTACTGAGGCGATTCTTTGCTCTGGCGGGCACGGGTTTT
CCTGCTGCGCTGCGTCACCATTTTGATCACGTCGCTGAGCGTACCGGGGA
CCGCATCTGCAGCGCAGCCAGAATGGACTTTGCCATCGAATGATCCCATG
GTGACATGGAGGGGCGCCTTTGATTATCCGCATGTCACGAGCCTAATCGC
ATCTGGAAGCGGCCCTGGGCATGTCCATTCAGGAGTGGCGGACCTGCGGG
CGAATTAATATGTTTAGTGGTCCACCGGTGGCCCTTGAACCCTGCTCACT
TCTTTTAATCCAGAATCAACACGCCGGGATCTGTACTCCGCACAGCTTGA
ACCTGGTCTGTCTCACACTGTTGTAGGATATATCCTCTACTCCCTGACCT
FMO03087.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMSr-RA | 2591 | CG32380-RA | 245..1379 | 39..1187 | 5010 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7380620..7381230 | 649..39 | 3055 | 100 | Minus |
| 3L | 28110227 | 3L | 7375467..7375910 | 1099..647 | 1575 | 94.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:15:38 has no hits.
FMO03087.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:43 Download gff for
FMO03087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 282..1409 | 32..1176 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:09 Download gff for
FMO03087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 239..1366 | 32..1176 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:28 Download gff for
FMO03087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 239..1366 | 32..1176 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:28 Download gff for
FMO03087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7375405..7375908 | 649..1166 | 94 | <- | Minus |
| 3L | 7380621..7381236 | 32..648 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:09 Download gff for
FMO03087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7368505..7369008 | 649..1166 | 94 | <- | Minus |
| arm_3L | 7373721..7374336 | 32..648 | 99 | | Minus |
