FMO03088.5prime Sequence
1242 bp (1020 high quality bases) assembled on 2008-07-09
> FMO03088.5prime
TATAGCATAATTAAACGAAGTTATCAGTCGACATGGACCGACTGGACTAC
AATTATCAGGAGAAGTTGGCAGACTTGCTGGATAATGAAAGAGAGGACGA
CGAGCCACATTTTCTGCAGCAGTTGAGGAACTTTTACACCGCCTGTCGAA
AACCTTTGAGCCAGGATCAAGTCCTGCGCATACTGGAGCATCTGATCGTA
ATGGAGAATATCCAAAATGAAGAGCTGTCCGTCGGCTTGACTGCCGCCTT
TCGTCTTCAAGTACTCATAGATCTAAATGACTCCAATACGTATGACATTT
GGAAGCAGTTGATGTCCCACAGGAAGCATTGGGATCCAAATACAACGAAC
AGGGAACCCTTAACTCGCGAAATGTTTGACAAGCTATGGGCCAGCCTGCC
AAAAATTCCCTTTCCGTTTAAGGAGTACTATTGGCGCGAATTAAGCGAGC
TGGAAGAGAAAATAATGAGCTATGGAAGCGAGGACGATGGCTTTGATAGC
GGTGATTTGGTTACGCGGATACCACCCTTTTGGATGATGCCCTGGCCAAA
TGGGAATATTACCTATGAAAATCTTTCCCAGATGGCCCATTGGCTGGATA
TAAAAGCCAATGAGTTCATTCTCACATATATCTATATGCGATTAAAGCTA
GTTGCGGAAGGAGTCTCAACGGAATCCTGGCATATAGATCGCGACCAGTG
CGCCGAGCAGTCCAGACAGATCCTCAGTCATCCTGCTGCATGGTTGGTAG
AGAAGAATCATCCCAGGCTCAAGGAGGAGCCAGTGCTGCAGGACATTTTC
GCGGAGCTGAAGCAGCGCTTTGGCCAAAAGCTTCTGGCGAACAGGAATAA
CTTTACTCGCAGCACACAGCACTTTCTTTTGGGCAAATTGAAAAGGATGC
GGCTGCGATTGAGCATCCTGCCCAGAAATTCTTCGGCCCATTCATGGTGC
GACGCATCGAAGGCACTACAGGGATGTCACATGAATGCTAGCGATTATTT
TGGAAATCTACTATCGGCCTTAATCACCTCCAGATCCCACAGGAGTACGC
CCACTATGGGCCATAGTCTTCGCGCAGTTGAATTCAGCCGAAATATCAAG
AAGCGATTTGTATCCACCCAAGTGCGTGGATGGCACTATGGCTCTGGGTT
CCACATTGTCAACGGAATGGCTATGGACCAATCGTGCTGGACGCGATTCA
CACACAAGTGGCCGCAGCGCTCGCATTACTCTTATCATCTCG
FMO03088.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frma-RG | 2975 | CG3239-RG | 161..1302 | 33..1162 | 5175 | 97.7 | Plus |
| frma-RF | 1930 | CG3239-RF | 161..1302 | 33..1162 | 5175 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5494687..5495772 | 1162..89 | 4585 | 97.1 | Minus |
| X | 23542271 | X | 5495837..5495892 | 88..33 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:53 has no hits.
FMO03088.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:07 Download gff for
FMO03088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-RA | 133..1269 | 26..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:05 Download gff for
FMO03088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-RC | 133..1269 | 26..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:42 Download gff for
FMO03088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frma-RF | 155..1291 | 26..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:42 Download gff for
FMO03088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5494702..5495772 | 89..1146 | 97 | <- | Minus |
| X | 5495837..5495898 | 26..88 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:05 Download gff for
FMO03088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5388735..5389805 | 89..1146 | 97 | <- | Minus |
| arm_X | 5389870..5389931 | 26..88 | 93 | | Minus |
