FMO03089.5prime Sequence
1233 bp (1008 high quality bases) assembled on 2008-07-09
> FMO03089.5prime
CGTATAGCATACATAATACGAAGTTATCAGTCGACATGGGCAAGGATCGG
GGCAGAGGACGTAGGAATAACCATTCCGGGCCATACAACAAGAGCAACTG
GCGTGGTCAGAAGAAGGATCGCCCCCAAAACAATGGTGGCGGTCAGCGCA
ACAGTGCTCCACAACAGAAATCCACGCTGCTGGAGACCCAAGTGGGCATT
ACGGAGTTCACTAACCCGGAGGCACCTGGCTTCACGGGAATACTTAAGTC
TCGCTTCTCTGATTTTCACGTGAACGAGATTGATAGCAATGGAAAGGTTC
TGGAACTGAACGATCTCAGTGTGCCTAAAGTGGCTATTGTGGCTGTGGCC
GAAAACGAACTGGACAACTGGCGGAAAGAACTGGAGGCAGTAATCGGCCC
GGAAGTTTGGCAGGATATAGCCAATCTGGCTAAGGCCAAAAACGATCCCG
CGATCGAGCAAAAGGTGGAGATTGATGTGACCACTCTGGATAAGGAGCAG
CGAACACAAGTCCACCAGATGATAAAACAGCTTTACAAGGGCAAGCTACT
GTCCACAACCATTGGACAGCAGCAGGCTAAGCCGAAGGTCCAGGAGGAGG
CATCTTTGGAAAATAAGGATGCGGCTGAAGGTGAAACCTCAACCCAGAAA
GACTCACAGGTGCCGGCAGAGGAGAAGAAGACTATAAAAGTATTTAAACC
AAAGCCAGGACGCGGTGACAAACGCTGGAGCTTTCCGGCGGATTACGTGA
CCTTCCTGGTGCACAAAACCAATTTGGTTACCAGCGATGTGGCCTCTACT
TTAGCAGCGCGACTGAACTTACGACCATCGCAGGTGAACTACAGCGGCAT
CAAGGACAAGCGGGCCAAAACCACCCAGAAGTTCTCCGTCAAGCGTCGTA
CACCAGAGGAGCATTTTGGTTGCAGCTCGCTCCCAACGGAATGTTCATAT
CGGCAACTTTGGGATTCGAAATCCATACACTGAAGCTAGGCGAATTGCAG
GGCAATCGTTTTCGAATGCCTTGCGACCATTGCCGAGGAGAGCGAGAAAG
AAATCGAGCTAGCCCTGCAATCATTGGAGGAACGCCGCTTCATCACTACT
ATGGCTTGCAACGGTTCGCCACCAGCCCAGGGTCCAACCATGAGGTGGGG
TGCTGCTCAGACCGATACAACTGCCTGCAACTGATCTGAACCGGACTCGG
ATGTGTGGAGTTTGACCTTCAATACCGACAAGA
FMO03089.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6745-RA | 2770 | CG6745-RA | 83..1208 | 36..1158 | 5135 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8510512..8510886 | 342..716 | 1875 | 100 | Plus |
| 3L | 28110227 | 3L | 8511102..8511411 | 818..1126 | 1010 | 92 | Plus |
| 3L | 28110227 | 3L | 8510258..8510451 | 149..342 | 955 | 99.5 | Plus |
| 3L | 28110227 | 3L | 8510085..8510203 | 36..154 | 595 | 100 | Plus |
| 3L | 28110227 | 3L | 8510939..8511042 | 714..817 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:13:48 has no hits.
FMO03089.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:18 Download gff for
FMO03089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6745-RA | 48..1154 | 36..1139 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:00 Download gff for
FMO03089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6745-RA | 83..1189 | 36..1139 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:35 Download gff for
FMO03089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6745-RA | 83..1189 | 36..1139 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:35 Download gff for
FMO03089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8510085..8510203 | 36..154 | 100 | -> | Plus |
| 3L | 8510264..8510451 | 155..342 | 100 | -> | Plus |
| 3L | 8510513..8510884 | 343..714 | 100 | -> | Plus |
| 3L | 8510940..8511042 | 715..817 | 100 | -> | Plus |
| 3L | 8511102..8511426 | 818..1139 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:00 Download gff for
FMO03089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8503185..8503303 | 36..154 | 100 | -> | Plus |
| arm_3L | 8503364..8503551 | 155..342 | 100 | -> | Plus |
| arm_3L | 8503613..8503984 | 343..714 | 100 | -> | Plus |
| arm_3L | 8504040..8504142 | 715..817 | 100 | -> | Plus |
| arm_3L | 8504202..8504526 | 818..1139 | 93 | == | Plus |
