FMO03090.5prime Sequence
1265 bp (1013 high quality bases) assembled on 2008-07-09
> FMO03090.5prime
CTTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGAAAAAGGGC
AAGGGATCAAGCTCCCTTGGATCGAAGGAATCATCGGGGAGACCATCCAC
GGCAGTCCTGGTGTTCAAGAAGTGCGCTAGATTTGCGGACTCTTCAGAAT
CGGCGGAGATCCAGCAGGACGGCAAGGAGCAACTGCCTGAGAGGCAAGAC
TCGCTGGATGCCAAGGAATCTGCAGGAATGGAAAAAGAGGCGATTAGCAA
TCAGCCATTAAAGGATGAGCCATCGAAAGATGAACCTAACCAAAGCGAGG
GCACTGCCATTTCCACCATACCGGCGATTGATAAACTACGTCGCTTCTGC
TTTATTGGATCCACGGACGAGCCCGTCTATACCACGCCCGCACTGGATCT
TGTTGTCGAGAACAATTTCGCATCGCTAAAGGAACTCTGCTCCCAAGTGA
GTGAAGACGAGCTGGTCGAGTGCTTGTTGAGCGTTTTGGGCAGCGAACCA
AATGAGGAGCAACCTCCCCGACCCGACGAGCCGCTCCTAATCCTGGCTGT
TTTCTTTACCACGTGCGAAGACGAGAAGAAGCGAAATGCGGTGCGTAATA
GATTCACCGACCTGATCACCAGCGAATCGGATCTTCTACTGTTCGTCCAG
TTGGTCAAGCGAGTCCAGAAGTTGCTCGAACGTAAAACGCCCTTCAATCG
CACAGTGCGAAAGGCCGTCCTCAACTGGTATGGCACGAAATCGCTTGATC
GCCTTCTCCACTTCTGGTCAATAGGCGATGGAAATCGTTGGCCTGCGCAT
CGCGATCTACTGTACCGCCTCCATTTTCGGCATGCCAATTTTTTACCGGA
AATCATTGCTGCCTTTAAGGCTGCTCTCATCATCGCCAAAGGAGCTATCG
CAGTGGCCTGATTTTTAACGCCCTTGACCAGCTTTCGCGAAACTATTGGA
GGGTTGTTGTGAAGCTTCGGCTACCCCACGGATCCCGAACAGGCTATCTC
ATTGTGAAGAAGGTCGTCGCTGGAGCTGGGGGGCATGGTGCCTTTTCATT
TGCTTCACGACCCCAAGGCCTGGCGGCATTTTCTTATTCCACACATGGAG
CCTATGAGCCACTTCTTCGAAAATGGCCACGCCCTCTTCGCGACTTTACT
CCCGGAGCGCCCCTTGCGCTGTGACCATTGGCCTGGAAAAAGAGCTAAGG
CGAGACCAGTTCGCCCGTACGTCTGCTGTTGGGAGAGAAAATGTGCCTGT
GAGAGGAATCCAAAG
FMO03090.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10803-RE | 4744 | CG10803-RE | 191..1374 | 38..1232 | 5125 | 96.6 | Plus |
| CG10803-RA | 2794 | CG10803-RA | 191..1374 | 38..1232 | 5125 | 96.6 | Plus |
| CG10803-RD | 4798 | CG10803-RD | 191..1368 | 38..1232 | 5025 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3486313..3487215 | 220..1133 | 3770 | 97.2 | Plus |
| X | 23542271 | X | 3485840..3486021 | 38..219 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:20 has no hits.
FMO03090.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:44 Download gff for
FMO03090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-RA | 180..1272 | 29..1133 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:11 Download gff for
FMO03090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-RA | 183..1275 | 29..1133 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:20 Download gff for
FMO03090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-RA | 183..1275 | 29..1133 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:20 Download gff for
FMO03090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3485832..3486021 | 29..219 | 97 | -> | Plus |
| X | 3486313..3487215 | 220..1133 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:11 Download gff for
FMO03090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3379865..3380054 | 29..219 | 97 | -> | Plus |
| arm_X | 3380346..3381248 | 220..1133 | 97 | == | Plus |
