FMO03091.5prime Sequence
1214 bp (1019 high quality bases) assembled on 2008-07-09
> FMO03091.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGATGACGTCGAACG
AATTCAGAGCGAGAATGAGAATTTGCGCAAGATTCGCAATCGCCTGATGC
AATGGGAGTCCAAAACGGACCCGCTGGCGGCTCTGAGTATCCAGCAAGAG
GAGCACCTGGACGTCCTGACCAATCTGTGGCGCGACAGCGGACCATCGGC
ACCGGCACCGACTACGCCCACCCAGGTGGGTCCTACCGATTCATCGGCAG
CTGCAACTTCGCAAAGCGGCGATGACATCAGACTACCTGCGGAGGGACTC
CAGAACACCAATGAGTTTCTGCTTTGGTTCGCGGACGTCAGCGCCGAGAT
CGAGCAACGTGGCGATGCCGACTACCACAAATACCTGCAGCAGCTGGAGC
AGCGCAAAGCGGAGTGCTCCCACATGCTGGACCAGATCGCTGGGGCCATG
GAGCGCCTGGGTGCCCTCTGCGACGAGTACGACTTTGTGTCGCAAAAGAC
CAGCGCTCTGAACACGGCCAGCGAGCAGTTGATCGAGGAGCAGGAGCGAC
TGCAGGAGCTGAGTCACGAGATTCAACGCCGTCTGCACTACTTCAGCCAG
GTGGAGTTGCTCAACCAACGACTTCAGAGCCCCACGCTTTCGGTGGCTAG
CGAAGCGTTCCGGGAGTGCCTCAACAAGATCGACGAATGCCTAAACTACA
TCGAGGAGAATCCCAAATTCAAGGATGCGGCCGCCTACAATGTGAAGTAC
AGGCAGTGCCTGGCCAAAGCCTCGGGTCTGGTGCGTAACTATGTGACGAG
TGTGATAAACCAGGCAACCGAGGCCACGCTCCATCCCAAGAACAATATGC
CGGATGCCTCCGCTGCTCTCAAGGCACCAGATGCCGCATTCGCTCTGTAC
TACGGCAAATATCAAACGGCCGCGGCAAAGTGAAGCGCGTCGCCCAGTTG
ATGAGTCCCGGTCGGACACAGCCTCGACTACGGCCACTATGGCGATCTCA
ACAGCACTACTGCGCAAAGAGCAGCGTATGTCCGCCAGCAGTGAATCTGT
CATACAAACGTTAGTGGCCACAGGGATCACTGCTTCCTTCACCCGAGCCT
GCCTTTGGTGCATGTTGCAGACGACGGTGTTACAGTTCTTCAGCCAGAGC
CACCTGAACCGATTACTGGGAGGCTGTGTACCAATCTTCTTAGGGAACAC
AGTGTGTCGAACCT
FMO03091.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog3-RA | 2973 | CG3248-RA | 30..1109 | 34..1096 | 4865 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3456302..3456815 | 711..198 | 2570 | 100 | Minus |
| 2L | 23513712 | 2L | 3455967..3456244 | 986..712 | 1210 | 98.2 | Minus |
| 2L | 23513712 | 2L | 3456870..3457035 | 199..34 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:13 has no hits.
FMO03091.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:20 Download gff for
FMO03091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog3-RA | 17..1141 | 26..1124 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:54 Download gff for
FMO03091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog3-RA | 23..1147 | 26..1124 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:46 Download gff for
FMO03091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog3-RA | 23..1147 | 26..1124 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:46 Download gff for
FMO03091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3455805..3456244 | 712..1124 | 92 | <- | Minus |
| 2L | 3456302..3456814 | 199..711 | 100 | <- | Minus |
| 2L | 3456871..3457042 | 26..198 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:54 Download gff for
FMO03091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3455805..3456244 | 712..1124 | 92 | <- | Minus |
| arm_2L | 3456302..3456814 | 199..711 | 100 | <- | Minus |
| arm_2L | 3456871..3457042 | 26..198 | 97 | | Minus |
