FMO03096.5prime Sequence
618 bp (618 high quality bases) assembled on 2008-07-09
> FMO03096.5prime
TCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGGCGTCCAACCG
TGCAGCGAAGTCTGGTTTTGCCGCCGAGGCCCAGCGCAAAATTAACTCCA
AGTACAGCGAGGAGCTGGCCCAGGAGAGCCTCGAGTGGATCAAGGCCGTC
ACCGAGGAGCCCATCAACACATCCGGCGACACCGACAACTTCTTCGAGGT
GCTCAAGGATGGCGTCATCCTGTGCAAGCTGGCCAACGCCCTGCAGCCCG
GCTCCATCAAGAAGATCAACGAGAGCAAAATGGCCTTCAAGTGCATGGAG
AACATCTCGGCCTTCCTCGCGTGCGCCAAGAACTTCGGTGTCCCCACCCA
GGAGACCTTCCAGAGCGTCGACCTGTGGGAGCGCCAGAATCTGAACTCGG
TGGTTATCTGCCTGCAGTCGCTGGGTCGCAAGGCCTCCAACTTCAACAAG
CCATCGATTGGCCCCAAGGAGGCCGACAAGAATGTGAGGAACTTCAGCGA
CGAGCAGCTGCGCGCCGGCGCCAACGTCATCTCCCTGCAGTACGGATCGA
ACAAGGGCGCCACCCAGTCGGGCATCAACTTCGGCAACACCCGGCACATG
GCAAGCTTTCTAGACCAT
FMO03096.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chd64-RB | 1429 | CG14996-RB | 180..743 | 37..600 | 2820 | 100 | Plus |
| Chd64-RC | 1226 | CG14996-RC | 27..540 | 87..600 | 2555 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4115304..4115646 | 433..91 | 1715 | 100 | Minus |
| 3L | 28110227 | 3L | 4114975..4115144 | 600..431 | 850 | 100 | Minus |
| 3L | 28110227 | 3L | 4122156..4122209 | 90..37 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:35:00 has no hits.
FMO03096.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:29 Download gff for
FMO03096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chd64-RB | 215..778 | 37..600 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:11 Download gff for
FMO03096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chd64-RB | 180..743 | 37..600 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:56 Download gff for
FMO03096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chd64-RB | 180..743 | 37..600 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:56 Download gff for
FMO03096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4114975..4115142 | 433..600 | 100 | <- | Minus |
| 3L | 4115305..4115646 | 91..432 | 100 | <- | Minus |
| 3L | 4122156..4122209 | 37..90 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:11 Download gff for
FMO03096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4114975..4115142 | 433..600 | 100 | <- | Minus |
| arm_3L | 4115305..4115646 | 91..432 | 100 | <- | Minus |
| arm_3L | 4122156..4122209 | 37..90 | 100 | | Minus |
