FMO03103.5prime Sequence
900 bp (900 high quality bases) assembled on 2008-07-07
> FMO03103.5prime
AGCATCCCTTATACGAAGTTATCAGTCGACATGTCCAAATTCCTGTCCTA
CTACAACCTGTTTCCCATCCCCGACCCCAAGGAGTTTCTGGGCCTAGCTG
CAGACAGGGAAAATGGCAATGTGGTGACTACGTTGGCGCGCAACGTGGTG
GTTGTTTTGAACATCAGCACACAAAAGCAGTTGCTCAGTTGGTCCCTGCC
GGAGAAGCTTTCCTCCAAGGTTATATACGATCCCAGCAGCCAGAAGTATG
TGGGCGTCTTTGGAAATCACGCGCTGCGTCTTTGGGATGTGGACACCAGT
GATGTGTCCAAGTGCAAGAAGCTGAAGTTTCAGAAAAGCATCGCTCACGT
GGTGGCAACCGAACAGGAGGCATTAATCCTCTACAGCGATGGCGAGTGCC
AAACCCTTTCCCAGGCATTGGCTTCGAGAAAGGACCAGAAGGAGGATACG
GCTGAGCAACTGGCCCTAGCCGCCAGCAAGGTCATCAGCAAGCCCACAGT
CCACGCATTGGCCCAGGGCCAGCAGGTGCTCACATATTTCGAGGAAACAA
AGGCCACCGGCGAAATGCAGCTTATCCGCCTCTCCCTGGACACGGCTGAC
CGGCGGAAGTACCTCATTAAGCGGGAAGAGGTTCGCCTCACGGGATATGC
TGTCGTCGAGGGCGATGCAGATCCTCAGTTGCTGACCATTTTGGTCTGAT
AAACGCATCTTCATGCTTAACCTGGCGGAGGCCACATCAGAGCGATCCCC
TGGACAATTCGTATCTATGCTGGCCGAGCTGAATGTGGAGAGCAAGCTAT
CCGTGCACGGAGTCTCACGAAACTTTGCTGCCATCTACGGCGCCCACTAT
GGGCAAGGAAGGCGCCTCTCTGTGGGTTTATACACTCAGTTTACGTGGTG
FMO03103.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9300-RA | 2156 | CG9300-RA | 57..918 | 31..893 | 4215 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19552883..19553248 | 326..691 | 1830 | 100 | Plus |
| 3L | 28110227 | 3L | 19553329..19553529 | 693..893 | 880 | 98 | Plus |
| 3L | 28110227 | 3L | 19552666..19552830 | 163..327 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 19552476..19552607 | 31..162 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:13:56 has no hits.
FMO03103.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:37 Download gff for
FMO03103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9300-RA | 55..924 | 31..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:04 Download gff for
FMO03103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9300-RA | 57..926 | 31..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:38 Download gff for
FMO03103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9300-RA | 57..926 | 31..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:38 Download gff for
FMO03103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19552476..19552607 | 31..162 | 100 | -> | Plus |
| 3L | 19552666..19552830 | 163..327 | 100 | -> | Plus |
| 3L | 19552885..19553248 | 328..692 | 99 | -> | Plus |
| 3L | 19553329..19553537 | 693..900 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:04 Download gff for
FMO03103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19545985..19546348 | 328..692 | 99 | -> | Plus |
| arm_3L | 19545576..19545707 | 31..162 | 100 | -> | Plus |
| arm_3L | 19545766..19545930 | 163..327 | 100 | -> | Plus |
| arm_3L | 19546429..19546637 | 693..900 | 97 | | Plus |
