FMO03104.5prime Sequence
1255 bp (941 high quality bases) assembled on 2008-07-07
> FMO03104.5prime
TTATACGAAGTTATCAGTCGACATGGCGGAGAAGCCGCTGGCCGACTGCC
CGGACTCTGGGCAGGTCCGCAAGCGTCCCCGGCTGGAGGACGAGGAGCAG
GAGCTCAAGGTGGCCGGCTTTTCGCTGAGCGCCATCGAGGAAATGCGGCG
GACCAGGGACAACGAGCTGCAGAACGAACCCATGGACCAGCAACTGCGAC
AGTTCCAGGTTCTCGACGAAGTCGGCTCTGGCAGCGATGAGGATGATGAG
TCAGACAACGCTAGCGAGCAGCAGGGCGGAAGGTATGGAGAAGGAGGCGA
CGAGGAGGAAAAGGCGGCTGATGGTGACGGCGAAGAATACGATTCCTCGG
AATTCGATGATGACGAGATCGAGAATCTGCTGGACGAGAAGCTGCCCGAA
GAGCTCCGCGAGTCAAAGCAGCCCAAATACGAGCAGCGTTTCAAGACTGT
GCTGGAAGAAAAGCGCCTCAACCACTTTGAAGTCCTACCCGAGGGATGGG
TGCAGGTGACCCACAACAGTGGAATGCCGCTCTTCTTGCATCGCAAAACT
CGCGTCTGTTGCGCATCGAGGCCCTATTTTCTCGGCACTGGAAGTGCCCG
CAAGCATGCAGTGCCCTTGGGAGCAATCCCCTGTCTTAACTACAGGCGGG
CTTTGGAGGAAGAGTCGGAGGTGGAGCAACAAAAGACGGATGGAGCGCCG
CCAGTGGCTGTATGTCCCATGGCCGGAGCTTCCGCTTTACCGGCCGAGCC
ATGGACGTGGAGGGAAAAGAGAACAACGAAGGCAGCACCGATTCCAAAAC
CCAACCAGATGGAATAACTGCCCTTATGCCGGCTGCTAAATTGTTACGGT
CAACGAAAATACCAAAAGGAATCCCTTTACACCGGAGCAACTAAACCCCT
ACTGCCAGAAACTCTTCAAATTCAGGGTGATTCGTGTGCTGCGATTTCGG
AGTTGGAATGGCTCGCCGCAAGTTCACCAAAAACCCGCTACACCTTCAAG
AATATTTCCACGAACCCCACGCTGGCCGGGTATGGCACTAGCTTATTTAG
TTCCCATAACTAGCGAATTGCTGGCGAAGGATCAACGAGACCTCCGGCCG
AGTCCGGAAGGGAGTGAATCATTGAATTCCAATGGCCAGAGCCTTGTCTG
CTTACTTGTGCACGAGAATACGTTCATGTGTCTTTAAAAGTAGGTCTCAC
TATGTAAGTTTCGGGGAGCTCTCAAATCGTACCGTGCTACCGCCCTCTTC
TTCTC
FMO03104.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pasha-RC | 2579 | CG1800-RC | 111..1226 | 23..1151 | 4855 | 96.4 | Plus |
| pasha-RA | 2847 | CG1800-RA | 562..1677 | 23..1151 | 4855 | 96.4 | Plus |
| pasha-RB | 2123 | CG1800-RB | 65..953 | 250..1151 | 3720 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31619508..31620133 | 457..1088 | 2380 | 95 | Plus |
| 3R | 32079331 | 3R | 31618538..31618769 | 23..254 | 1160 | 100 | Plus |
| 3R | 32079331 | 3R | 31619238..31619444 | 252..458 | 1020 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:54 has no hits.
FMO03104.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:38 Download gff for
FMO03104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pasha-RA | 555..1525 | 15..985 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:17 Download gff for
FMO03104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pasha-RA | 555..1525 | 15..985 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:15 Download gff for
FMO03104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pasha-RA | 555..1525 | 15..985 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:15 Download gff for
FMO03104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31618531..31618769 | 15..254 | 98 | -> | Plus |
| 3R | 31619241..31619444 | 255..458 | 99 | -> | Plus |
| 3R | 31619510..31620037 | 459..985 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:17 Download gff for
FMO03104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27444253..27444491 | 15..254 | 98 | -> | Plus |
| arm_3R | 27444963..27445166 | 255..458 | 99 | -> | Plus |
| arm_3R | 27445232..27445759 | 459..985 | 98 | == | Plus |
