FMO03106.5prime Sequence
980 bp (874 high quality bases) assembled on 2008-07-07
> FMO03106.5prime
TATAGCATACAAAAAAAGAAGTTATCAGTCGACATGAACAACGACTACCA
CACTTATAGCGACGCCGAGGAGGACGAAGAAGACCTGCGAAGTTCCGAGT
GGACAAACGACTTCAAGAACCTCACATTGAAGCACGAGATCTTTAAGGAT
ATTAAACTGACACCCAAAGAGGACTGTGATGACCTGGCACAAGTTATAGC
AACCGCCAACGAAGAGGATGAACCGGAGGACGAAGAGCCAGAGGAATACG
ATGAAGACGATTACGACGATATCGGAGATGACTATGATACGTATGAGGAG
GCCTATACGGGCTTTAACAAGCTTCACGTTCAGCCGCAGCTAACAAATGC
CAGTGGAGGTGGCTCCGGCGGTGGCGCTGGAGGTGCATCTGGTGGCTCAC
AACGCGTCAGCAGCTACCAACCAAACGAAAAGCTGTTGCGCCGCTACTCC
GCCCGCATTAATGTAGAAAAGTACGATCCCACCACAAATATGAGCGCGCA
GGCGGCCAACCGGCTGGTGAACTTCGATCGGCGCGATAGGACACAGGTGC
GTGACAAACACGACCGAGCCACTGCGGAACAGGTAATGGATCCACGTACC
CGGATGATACTCTTCTAGCTGCTGAATCGCGGAATGATACAGGAAATCAA
CGGCTGCATTTCTACGGGCAAAGAGGCTAATGTCTATCACGCCGTTTCCA
AAAATGGTGAAGAGGAGTTTGCCATCAAGATCTACAAGACGTCCATTCTA
GTATTTAAGGACCGCGACAAATATGTGTCAGCGATTTCCGGTTTCAACAC
GGCTACTGCAAGCACAATCCGCGCAAAATGGTGCGTACCTGGGCGGAGAA
GGAATGCGAAAACTACTTGCGATGCGCACGCTGGCGTTCCTGTACGGAGC
CATCCTGCTACGCTCACATGTACTGGTCATGCGGTTTTGCGGTCGCGACG
AATGCCTGCGCCAAAGTTAAAGGTGTTCGA
FMO03106.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RIOK1-RB | 2121 | CG11660-RB | 176..1121 | 34..973 | 4385 | 98.1 | Plus |
| RIOK1-RA | 2049 | CG11660-RA | 104..1049 | 34..973 | 4385 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11647295..11648180 | 973..94 | 3965 | 98.1 | Minus |
| 3L | 28110227 | 3L | 11648240..11648299 | 93..34 | 240 | 93.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:39:10 has no hits.
FMO03106.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:25 Download gff for
FMO03106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11660-RB | 166..1125 | 24..979 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:23 Download gff for
FMO03106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11660-RA | 96..1055 | 24..979 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:23 Download gff for
FMO03106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RIOK1-RA | 96..1055 | 24..979 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:23 Download gff for
FMO03106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11647289..11648180 | 94..979 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:23 Download gff for
FMO03106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11640389..11641280 | 94..979 | 98 | <- | Minus |
