FMO03108.5prime Sequence
783 bp (764 high quality bases) assembled on 2008-07-07
> FMO03108.5prime
CTTAAAAACGAAGTTATCAGTCGACATGCCGCCAAAGTCAAGCAGTTAGA
AAAACCAGGTTACTTGGTACCACTGCGAGTCCTGCGGCGTCCACATTCCC
TCAAAAGCGAGAGATAACCACGAGGGCTTATGCTTCGCCATCAGCCAGGA
TGATGTTGGTCCCGATTCTGAGGCGGAGTACGTTCGCAGTGGAGCAATCT
ATACGAGAAGTCTTCAACAGCGTAATTTCGAGGTGGAGTCTCTGAAGGAT
CTGCCCACCAAGTATGCCAATATGCTAGTCTTCGTCTCCGAGGGTGCGAT
GCAATTGGCACAGCTACACATTGGACAACATGTGGTGCTGGAAGCTCCAT
CGACGGCGGAGCAGCCGCTGGTTAGGATTGTATGGCCCACATCAGAGCAA
TTCCTCACCACAGTATTTGTGAGCGAAGGGGATTTCAAACTCCATTGCAC
ACAACTTCGAGGAAAGCTACTCAAGATCTCTGCCTTGCATCCCAGTCGCC
TCACTGCGGCTGCCAGCATTTCCCTGAAGCATGTAAACACCACAGAGACC
TCCCTGAAGTCAGTACAACTGCAGGACGCCATTGCCCTTCTCAAAAGAGA
CATGGTCAATCGGGTATTCTACAAGGACAGTCTGATCCACATGAATTTCT
TTAACAAAATCGCTGACTTTTCGCCTGGAGCGATGGCAGAGCACAGTGGG
AAGAGGCTCTAGCTGGTCTGAGTCTCGACTCCCAAACCCTTGCACTTCAT
CCAGGTTACCAAACGTAACCCACGCTCCACCTG
FMO03108.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5776-RB | 3392 | CG5776-RB | 48..804 | 22..783 | 3595 | 98.6 | Plus |
| CG5776-RA | 2912 | CG5776-RA | 48..804 | 22..783 | 3595 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12703995..12704404 | 431..22 | 1990 | 99 | Minus |
| 2L | 23513712 | 2L | 12703609..12703937 | 762..431 | 1495 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:44 has no hits.
FMO03108.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:52 Download gff for
FMO03108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 17..776 | 18..783 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:15 Download gff for
FMO03108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 45..804 | 18..783 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:50 Download gff for
FMO03108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 45..804 | 18..783 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:50 Download gff for
FMO03108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12703590..12703936 | 432..783 | 98 | <- | Minus |
| 2L | 12703995..12704407 | 18..431 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:15 Download gff for
FMO03108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12703590..12703936 | 432..783 | 98 | <- | Minus |
| arm_2L | 12703995..12704407 | 18..431 | 98 | | Minus |
