FMO03111.5prime Sequence
1228 bp (977 high quality bases) assembled on 2008-07-07
> FMO03111.5prime
TAGCATATAAATACGAAGTTATCAGTCGACATGCCAGCGGACATTCTGCA
GATATTCCAGAAGCTGGCGCTCGACTTGCTGCAGGATTTGGAGCAACCGG
TTGACAACAAAGGATGCGCAGAACGTTCGAAAAATCTGCGCGAGGAGGGA
AACCTTATGTTCAAAGAGTCCGCATCGGGATCCTCCAAGGACTCGGTTCT
GAAAGCATGCAGGCTTTACTCGGAAGCCGTTTTCGAGGCTGAGAATGCTG
TGGAAGAGCTGTCGCTGGCGTTTGCCAACCGAGGAATAGCTTTGCAGGAG
TACGGGTACTACAGAGAAGCCTATGACGACTGCTCCAATGCGCTGGAGTG
CGGATACCCGGAAAGGCTGCGGCACAAGGTGATCATGCGGCAGGCCTTCT
GCGCCTGGAAGCTGAAGAAGATTGCTTCGCTAGAGGAGCATTTGGATTAT
CTCGGGCAGCTGCAGCTTAAAGAGAGCTTTGAGCAGCAGCTGGAAGACCT
GAAGCAGAAACTGGAGCTGCTAAAGAACCAACCCAGAGAGCAGGAAACAC
AAGGGAAAGTGGTGGATAAATCTCTAGGGGAAATCCTTACAGATCCTGGT
CCCCGTGGTCGATATATGGTGGCTAAGGAAGCGATTAGCAAAGGCAACGT
AATCTTTTCAGAGCGCGCCTCCTGCTTTGTTCCATTGGAGCAACTGCTTA
TTTGCCAGCAGTGCGCCGCCACCTTAATGAGCGCACCCATACCCTGCCCC
AATTGCCATCAGCGGGTAGTCTACTGCTCTAGGAAGTGTCGGGAGGCGCA
CTCGGCCATCCACAAATTCGAGTGTGCCGCCTACAGAAAGGATATCCTCC
GACTTTTGGGCATTTCGCATTTGGCCTTGCGATTGCTTTGACTTACATCC
CTACATAAAGGCCTCATTTGCCAGAGATGACCATTGCAAAGGGTATGTGG
GAAGAAATATGAATCTGTCCCGAAACCGGAAGAGAGTGAAACGCCTTCAA
GTATTTGCGAAGCTGCGCATGGTCAGCTCACCTGGATCAGGCTATCGATG
AGGAGTTAATTACCAATTCCTCTGTGCCAATCTCCTTCACTTACCTGAAG
ACACACGAATTCTAACGATCAGTTCCCTCAATGCAGGCAGAATGGAAGAT
GCACACTGATATCACCTGAATCTCGGCCCTCCCCGCCAATTGCTCTGCCG
ATGGTACGATTAAGGCGACGTCCCGTTG
FMO03111.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1868-RC | 2358 | CG1868-RC | 148..1279 | 30..1150 | 5010 | 97.2 | Plus |
| CG1868-RB | 2399 | CG1868-RB | 189..1320 | 30..1150 | 5010 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9583581..9584135 | 584..30 | 2745 | 99.6 | Minus |
| 2R | 25286936 | 2R | 9583016..9583525 | 1089..585 | 1975 | 96.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:08:06 has no hits.
FMO03111.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:24 Download gff for
FMO03111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RA | 87..1219 | 19..1143 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:30 Download gff for
FMO03111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RB | 181..1313 | 19..1143 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:49 Download gff for
FMO03111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RB | 181..1313 | 19..1143 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:49 Download gff for
FMO03111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9582956..9583525 | 585..1143 | 94 | <- | Minus |
| 2R | 9583581..9584143 | 19..584 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:30 Download gff for
FMO03111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5470461..5471030 | 585..1143 | 94 | <- | Minus |
| arm_2R | 5471086..5471648 | 19..584 | 98 | | Minus |
