FMO03117.5prime Sequence
1214 bp (983 high quality bases) assembled on 2008-07-07
> FMO03117.5prime
TAGCATACATAATACGAAGTTATCAGTCGACATGGGGGCATGCAATATAA
CAGTCTTATTGCTGGTCATCATGTTGTGGCTACCCCATGGTCTGTCCATG
GGCAATAGCTGCTCGGCATCGGTGCTGGAGGCGCGTAGGTTCTTCGAGCT
GGAAAATGAACAATTGCGAAGGCGTTTCCATGAGGAATTCCTTTCCGGCT
ACAACTATAACACCAATGTAACGGAGGCGAATCGCCAGGCCATGATCGAA
GTGTATGCCCGCAATGCGGAACTGAATAAGCGACTCGCGCAGCAGATAAA
GTCCTCCGATTACGTTCAGTCCGAGGATGCGGATATACGACGACAGGCCG
AGCACCTATCCAAATTGGGTGCATCCGCTCTGAATGCCGACGACTACCTG
GCCCTGCAGAATGCCATCAGTTCGATGCAGACGAACTATGCTACCGCCAC
CGTGTGCTCGTACACCAATCGCAGTGATTGCTCTCTCACCCTGGAGCCGC
ACATACAGGAGCGTCTGTCCCATAGCCGTGATCCTGCCGAACTGGCTTGG
TATTGGCGGGAGTGGCACGATAAGTCCGGAACTCCCATGCGGCAGAACTT
CGCCGAGTATGTGCGACTGACGCGCAAGGCATCTCAGTTGAATGGTCACC
GCTCCTATGCCGACTACTGGGTGCAGTTCTACGAGGACCCGGACTTTGAG
CGACAACTGGATGCCACTTTTAAGCAGCTGCTGCCCTTCTACCGACAGCT
CCACGGCTACGTTCGCTTTCGTTTGCGGCAGCACTACGGTCCGGATGTGA
TGCCAGCGGAGGGAAACATACCCATAAGCCTGCTGGGCAACATGTGGGGG
TCAGTCGTGGAACGAGCTGCTCGATTTGTTTACTCCGTAATCCGGAAAAG
CCGTTTGTGGACGTGAAGGCCGAAATGGAGAAGCAGGATACACCGTGCAA
AAGCTTGTTTGAGCTGGGTGATCAGTTCTTCCAGTCCCTCGGAATGCCGC
GCTTCCTCCCAGTTTCTGGAATCTGATGTGCTCACCCGTTCCGACGATCG
TCACGTGCTGCCACGCCCTCGCATGGGACTTTACCAAGACAGCGATGTAG
ATCAGATGTGCACGAAAGTGGACAGCCCCTACTTATGAATCATCTGGGAC
TAGACCTCCGTCATCTGCATACAACAAGTCGCCTGTCCTACGGGAGCCTC
CAATCCTGTGCTCC
FMO03117.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acer-RB | 3198 | CG10593-RB | 346..1454 | 32..1134 | 5130 | 98 | Plus |
| Acer-RA | 2342 | CG10593-RA | 346..1454 | 32..1134 | 5130 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8522401..8522968 | 79..646 | 2840 | 100 | Plus |
| 2L | 23513712 | 2L | 8523442..8523938 | 644..1134 | 1820 | 95.6 | Plus |
| 2L | 23513712 | 2L | 8522278..8522325 | 32..79 | 240 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:51:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 1897..1935 | 971..1012 | 113 | 78.6 | Plus |
FMO03117.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:27 Download gff for
FMO03117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acer-RA | 377..1488 | 29..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:48 Download gff for
FMO03117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acer-RA | 343..1454 | 29..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:08 Download gff for
FMO03117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acer-RA | 343..1454 | 29..1134 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:08 Download gff for
FMO03117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8522269..8522325 | 25..79 | 91 | -> | Plus |
| 2L | 8522402..8522966 | 80..644 | 100 | -> | Plus |
| 2L | 8523443..8523938 | 645..1134 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:48 Download gff for
FMO03117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8522269..8522325 | 25..79 | 91 | -> | Plus |
| arm_2L | 8522402..8522966 | 80..644 | 100 | -> | Plus |
| arm_2L | 8523443..8523938 | 645..1134 | 95 | | Plus |
