FMO03118.5prime Sequence
411 bp (411 high quality bases) assembled on 2008-07-07
> FMO03118.5prime
TACCTTATACGAAGTTATCAGTCGACATGTCGCAGACCATGCCGCCAGAA
AACCTAAGCAGCCGCCTGTTGACGGTGCTCAGTTTGCCTCTATTCGAGCG
CGTGCACGAGCTGAGCATCCTGTTCGATCGGTGCTCCTTGCGCCAAGTGC
AGGAGATCTTCCCCCACGTTGTGCACTCCATCTTCGGGATAGATGGCAAT
CCGTTGGGCTGGGGCCTGCGGACCACGACGCTTGAAAACAATCCGGTGCA
ATTCCAAACGCTGCACCAGTTCTTCGGCGTCTGTGGTCCCCTGATGCATG
TTTGCCACCGTCTGCTCGTCGACCAGTACAAATTCGAACTAGACATCAAT
CTGCTGCCGGCGAAATTCGTTAGCCTGCTGCAGAATGGTCAGAATCCTAG
TTTCTATGCAG
FMO03118.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6962-RA | 2492 | CG6962-RA | 110..495 | 26..411 | 1930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11882035..11882335 | 360..60 | 1505 | 100 | Minus |
| 3R | 32079331 | 3R | 11881930..11881982 | 411..359 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:29 has no hits.
FMO03118.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:41 Download gff for
FMO03118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 107..496 | 22..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:56 Download gff for
FMO03118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 106..495 | 22..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:27 Download gff for
FMO03118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 106..495 | 22..411 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:27 Download gff for
FMO03118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11881930..11881981 | 360..411 | 100 | <- | Minus |
| 3R | 11882036..11882335 | 60..359 | 100 | <- | Minus |
| 3R | 11882392..11882429 | 22..59 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:56 Download gff for
FMO03118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7707652..7707703 | 360..411 | 100 | <- | Minus |
| arm_3R | 7707758..7708057 | 60..359 | 100 | <- | Minus |
| arm_3R | 7708114..7708151 | 22..59 | 94 | | Minus |
