FMO03121.5prime Sequence
1269 bp (952 high quality bases) assembled on 2008-07-07
> FMO03121.5prime
ATAGCATACCTTATACGAAGTTATCAGTCGACATGGTCACCATGGAAAAC
AGCGACGAGATAATGCAGATCCTAGAGCGCTTTACGGATCTTAAACAAAA
GGAGATCCCAAAGGAGCTGGAGGAGTACCTACAGTATGTGGCCAAGACCG
GCGACACCATCTTCAAGTGGTCCAGCCTGAAGTACTTGTTCCGCGAGAAG
CTGCTCAGCGTGATCAAGCACTTTAATGAGGATTCGCCGCGTTTGGAGGA
GATTCCCAACTATCCGAATGTGGACCCTTTCAACTACGAGACCATGAAGT
CCTCGTTGCTGGAGCGCTTGGACCTTTTCAATGCAGCTCCTTTTACCGTG
CAGCGGTTGTGCGAGCTACTAATCGATCCTCGGAAGCAGTACTCGCGCAT
CGATAAGTTTATGCGTGCTTTGGAAAAGAATATTTTAGTGGTTAGCACAA
TCGATCCTGGACGCAAGCGTACCGAAAGTGAGAATGGCGACTCGCTGGAC
TCAGTGGTCAACGGGGACCTCTCCATGGAGGTGAACATTGACATTGAAAT
GGAGAATAATAACGGTAACGCCGATGAGGGCTCATCTCCCGGCGCCGGTT
CGGCAGGTTGTGCCCAGAAGGCAAGCTGCCCGCGTTCGGACGACAATGAT
CAGCCCAAGGCCAAGAAGGCAAAACTGGAGATCGATGGTGAAGAGCGTTC
GGAAGCGAGCGATGAAAACGGACACAGAAGTGGCAACCAGGGTCAAAAAT
GAAAAGGATGAGAAGAATGACAACGATGAGACTGATTCGCCGCATGACGC
TGCCGAGATCGAGGAGCCCGATGAAGAGGTGGATGAGGCTGATCAGGAAA
CCAAGACCACCAAGCAGCCCTGCTTACGGCAGTCAGAAGGAGGGCGAGCA
GGAAGGAAAGTTTTCCATCATCTGCCGATGACGAAGGCGGAGACCCAATG
GTGAGCAATTCATAAAAAGCTGAAAAAGAACTTGTTGCTTCAGGAAAAGA
AAGGGAGGAGGACAAAAAGGTGGCAATCCAGCCAAAAGAAGAGAATTTAA
AGAAGGAAAAGTCCGTCCAGGTCTGAATACCCGAACGAAAGTGGCACATT
TAGGGCGACAAGCATTGTCAGAAATCTACCCCGCCTGTCCCGATGGGGAA
AACTAGTAGACCTGTCAAGTTAAGGCCATAAACGAAAGAAGAAAAACTCT
CCTATTTAATCTGTAAAGACTGACGCATAATCTGCCTCTCTTCGTGTAAA
CAGATGACAAGAATGTCTC
FMO03121.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPP4R2r-RC | 2409 | CG2890-RC | 144..1296 | 33..1187 | 4955 | 96.1 | Plus |
| PPP4R2r-RB | 2397 | CG2890-RB | 132..1284 | 33..1187 | 4955 | 96.1 | Plus |
| PPP4R2r-RA | 2426 | CG2890-RA | 161..1313 | 33..1187 | 4955 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10480082..10480700 | 437..1058 | 2610 | 96.5 | Plus |
| X | 23542271 | X | 10479501..10479717 | 33..249 | 1085 | 100 | Plus |
| X | 23542271 | X | 10479835..10480024 | 249..438 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:46:47 has no hits.
FMO03121.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:44 Download gff for
FMO03121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPP4R2r-RC | 140..1171 | 23..1058 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:21 Download gff for
FMO03121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPP4R2r-RA | 152..1183 | 23..1058 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:44 Download gff for
FMO03121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPP4R2r-RA | 152..1183 | 23..1058 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:44 Download gff for
FMO03121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10479486..10479717 | 18..249 | 96 | -> | Plus |
| X | 10479836..10480024 | 250..438 | 100 | -> | Plus |
| X | 10480084..10480700 | 439..1058 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:21 Download gff for
FMO03121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10373519..10373750 | 18..249 | 96 | -> | Plus |
| arm_X | 10373869..10374057 | 250..438 | 100 | -> | Plus |
| arm_X | 10374117..10374733 | 439..1058 | 97 | == | Plus |
