FMO03124.5prime Sequence
1243 bp (1026 high quality bases) assembled on 2008-07-07
> FMO03124.5prime
TCGTATAGCATACTTAATACGAAGTTATCAGTCGACATGGAATCCCGGCT
ACCGAAACCGTCGGGCCTGAAGAAACCCCAAATGCCGATTAAAACCGTGC
TGCCCACAGATCGAATTCGCGCAGGATTGGGAGGTGGAGCCGCTGGAGCA
GGCGCCTTCAATGTCAATGCCAACCAGACATACTGCGGCAACTTATTGCC
GCCCCTCTCAAGGGACCTCAACAATCTGCCCCAGGTGCTGGAGCGTCGCG
GAGGAGGAGCACGTGCCGCCTCCCCAGAGCCCATGAAGTTGGGCCACCGG
GCCAAGCTGAGACGTAGCCGTAGCGCTTGCGACATCAACGAACTGCGTGG
TAACAAGCGCACTGCGGCTGCTCCTTCATTGCCCAGCATTCCCAGCAAAG
TATCCCGCCTGGGCGGTGCACTCACTGTTTCCAGCCAGCGACTAGTGCGT
CCTGCGGCGCCTTCGTCAATAACAGCAACAGCTGTCAAAAGACCACCAGT
AACGCGTCCTGCTCCACGGGCTGCAGGAGGAGCAGCCGCCAAGAAACCAG
CAGGAACAGGAGCAGCAGCTTCGTCAGGAGCCGCGGCTGCTGCTCCCAAG
CGCATCGCTCCCTACGACTTCAAGGCCCGCTTCCACGATCTGCTAGAGAA
GCACAAGGTGCTTAAGACAAAGTACGAAAAGCAAACAGAGGACATGGGCG
AGCTGGAGTCCATGCCTCAGCAACTGGAGGAGACGCAGAACAAGCTTATC
GAGACGGAGTCCTCGCTGAAGAACACCCAGAGCGACAACGAGTGTCTTCA
GAGGCAGGTGAAGCAGCATACCGCCAAAATTGAAACATCACATCGACGCT
GGGCAGGACCAAAGAGGAGCTATCCGAGCTGCAAGCAATACATGAGAAGT
AAAAACGGAGCATGCTGCTCTAAGCACAGAAGTGGTGCATCTGGCGCCAG
CGCACCGAGGACTCCTGCGCTGCAATGAGCAGCAGGCCGCCGGAGCTGGA
GACCTGCAAAGAGCACCTCTTCCAGTCGAACATGGAGCGCAAAGAAGCTG
CACACACGGTCATGGAACCTGGCGCGCAAACATCCGGTCTTTCTGTCGAT
ACGACGGCGCTGAATCCGAAGGAGACCTGTATGGTGTTTGCACTGGAACC
TTTCACGACGAGTTCATCGTGGAACTGCAAGACCTGACCCAGTCCAAAGC
AGAGAGTGGTCACGTATCTTTCCATATGTCGAACCAGGGCTCT
FMO03124.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ncd-RB | 2720 | CG7831-RB | 502..1643 | 37..1179 | 5120 | 97.4 | Plus |
| ncd-RA | 2340 | CG7831-RA | 122..1263 | 37..1179 | 5120 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29805707..29806346 | 896..258 | 3150 | 99.8 | Minus |
| 3R | 32079331 | 3R | 29806404..29806626 | 259..37 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 29805478..29805646 | 1066..897 | 595 | 96.5 | Minus |
Blast to na_te.dros performed 2014-11-28 22:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2729..2880 | 436..593 | 136 | 57 | Plus |
FMO03124.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:03 Download gff for
FMO03124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncd-RA | 493..1556 | 29..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:36 Download gff for
FMO03124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncd-RA | 113..1176 | 29..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:15 Download gff for
FMO03124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncd-RA | 113..1176 | 29..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:15 Download gff for
FMO03124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29805454..29805647 | 897..1091 | 93 | <- | Minus |
| 3R | 29805707..29806344 | 260..896 | 99 | <- | Minus |
| 3R | 29806404..29806632 | 31..259 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:36 Download gff for
FMO03124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25631176..25631369 | 897..1091 | 93 | <- | Minus |
| arm_3R | 25631429..25632066 | 260..896 | 99 | <- | Minus |
| arm_3R | 25632126..25632354 | 31..259 | 98 | <- | Minus |
