FMO03126.5prime Sequence
1193 bp (1041 high quality bases) assembled on 2008-07-07
> FMO03126.5prime
GTATAGCATACATAATACGAAGTTATCAGTCGACATGAGTGTTTTATCAA
AATATGTTGACCGGATTGCAGAAAAGTGTGAACATAATGGGTTTACAAAA
CACGCTTTTAGCTATGCTCTAGTAACTAGTGCTATCCTAGCACTTACCAT
TAAAGTTACTATCCCTTACGTAAAAAACGTAAATACTACGTCTAGTGTAA
GGACCCAAAAAGGAAAAACCAATGGCCAACTTTCACCATCGACAAGAGAT
AGCTCAGAAGAGGATTTCAAGCTTGCAGAGGCCGAAAAGTTATTGGTTGC
ACAGCAGCTTAAAAAAAAAGCTACAAATAATTTAGTTGAGCCTGGTCTAA
ATAAGGAGTTTTTAAAACATTTGCAAATGTTGGCCAAAATAATGATTCCT
CAGGCCTTCTGCTATGAAACAGGATTACTAAGCGTTCATACTTTTTGCTT
GATTTCTCGAACATTTCTTAGTATTTATGTTGCCGCATTGGAGGGAGCTC
TTGTTAAATTTATAGTTCGAAAGGATATTAAGCAATTTGCCCTTGTATTG
CTTAAATGGTTTGGAATTGCTATCCCTGCTACTTTCGTTAATTCTATGAT
ACGGTTTCTCGAAAGTAAACTGTCTCTGGCGTTTCGAACTCGGCTTGTGC
GTCACTCATATCGGCTCTATTTTAAAAACCAAAATTACTACAGAGTATCA
AATTTGGACGGACGCATTGAAAACGCGGATCATAGACTTACGGAAGATAT
TTCTGTGTTCGCAAATTCTGTAGCTCATTTGTATAGTAGCCTGACTAAAC
CATGCTTCGATCTGATGCTTATTGGCTTGGCACTAATGAGATCGTCTAAA
AAAATGAAAGCTAACATTATAACTGGACCAGCATTATCAATCGGGGTTAT
TGCCCTTACAGCCCATATATTAAGAATTGTTTCACCGAAGTTCGGACAGC
TGGTATCGGAAGAAGCAAAATAGATATGGGTATTTAGACATATACACTCC
CCGCATAATAACAATGCGAAGAAATGCTTTTTACGGAGTCATAGTGAAAT
GCAAGCAGCTAGCAGCAACACCGCTGTATCAATGACTACATTTACAAGCT
TGGTTATAATGCTTGACCATTTTAGGAATACGTTGGTCGTACTGCATGAT
AGATCCTTCAATTGACGCAGTAACTAGGACCTGGAACGTTCTC
FMO03126.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2316-RH | 2614 | CG2316-RH | 132..1163 | 35..1061 | 4910 | 98.9 | Plus |
| CG2316-RC | 2773 | CG2316-RC | 291..1322 | 35..1061 | 4910 | 98.9 | Plus |
| CG2316-RD | 2709 | CG2316-RD | 227..1258 | 35..1061 | 4910 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 188578..189179 | 636..35 | 3010 | 100 | Minus |
| 4 | 1348131 | 4 | 188229..188372 | 876..733 | 720 | 100 | Minus |
| 4 | 1348131 | 4 | 188032..188170 | 1014..875 | 555 | 97.9 | Minus |
| 4 | 1348131 | 4 | 188425..188528 | 735..632 | 505 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:39:18 has no hits.
FMO03126.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:28 Download gff for
FMO03126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2316-RA | 160..1205 | 23..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:28 Download gff for
FMO03126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2316-RD | 213..1258 | 23..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:26 Download gff for
FMO03126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2316-RD | 213..1258 | 23..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:26 Download gff for
FMO03126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 188005..188169 | 876..1038 | 96 | <- | Minus |
| 4 | 188230..188369 | 736..875 | 100 | <- | Minus |
| 4 | 188425..188523 | 637..735 | 100 | <- | Minus |
| 4 | 188578..189193 | 23..636 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:28 Download gff for
FMO03126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 208631..208795 | 876..1038 | 96 | <- | Minus |
| arm_4 | 208856..208995 | 736..875 | 100 | <- | Minus |
| arm_4 | 209051..209149 | 637..735 | 100 | <- | Minus |
| arm_4 | 209204..209819 | 23..636 | 99 | | Minus |
