FMO03130.5prime Sequence
1247 bp (992 high quality bases) assembled on 2008-07-07
> FMO03130.5prime
GCATACCTTATACGAAGTTATCAGTCGACATGGAGGACCAAAGCAACGCA
GCCCCCGCTGTCGCCGCGGAGAACGGCGGAAACACCGCGCAGGAGGTGTC
TTCGACAACTCAGCCCATAGAGCCCACAAAGCGCTCGCTGCGCGTGCAGA
CCTGGAAAAAGATCCAAGAGGGCAAGGTTGGCATTGGATTCAACAACATA
TTTAACCGAATTCCTTCGTTCGTGGGTGCCGATAAGGCTGCTGCCTTGTT
TGCCAATGAAGAGGAGTTCAAGAAAGCACAGCACATCAAGGTGAACATCG
ATCGCGTCTTGCATGAGTTTAAGGAACTGGCATTGCTGGCCGACAAGTCC
GTATACTTGCCCAGCACCCGCGAATCTTCTGCACTGTGCCTAAAGGTAGA
TGTGCTGGCCGATGCCACCGAGGAGCAGAAAAAGGAGGCTCTGCGCGTTC
AAGATATTCAAAAGTTTCGCTCGGAAATTGGATTGGACAGCGGTCTGAAG
CTGGACATCGTGGTTATTGGCTCTGTTGTAGTGTCACGCGAGGGTTACCG
CATTGGACGCGGAAATGGTTTCGCTGATCTGGACATCGGCCTCCTTATTG
AACTGGGAGCCATTACACCGAAGACAATTATTGTCACAATCGTGCACGAC
ATGCAGGTGGTGGACTCACTGCCCCCGAAATCTATTCCAGAAGTACGATA
CGCCAGTTGATATCATTGCAACACCCACAGAAATAATCAGGGTGCCAAAG
CGCTTGTCTTTCCCCAATGGCGTTTACTGGGAGCTGCTGTCCGAGCGCCG
TCTAAAAATATTGCCCGTGCTGCAGCAGCTTAAGGAAAGGGAGGAGAAGG
CGGGAAATCCATATCCCTCAGGAAGGAGACACCGATGTGGAGCACATCAA
AACACAGACGCCGCGTTGGGCCTGTGCGCCGGCGCATTCAACGAAGGAAA
CCCAGGTCGCACCACTTCGCAGACTGACAACGAACAGCGCAGGCGAGACT
GCTTAAAACCGACTTCCGCGGGCGCAAGGTCGTTTCGTCAATCGCCGCAA
ACGTACAACTAGTCTGAGGCGATCAGTCTGTGTGAGCAAGGTGCTTAAAC
TGATTGATTCCTAAGTACCAAGGCTGCATCTGATGACGTCGTTCAAAGAA
GAACAAAGACAGGTAATTTGCCATAAGTGACACCGTTTCGTGAATTTCCC
GCTACAGACATTAAAGCTCGGAAGACTTCGCCCAACGCGCCGAAGCT
FMO03130.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lost-RA | 2691 | CG14648-RA | 127..1262 | 30..1156 | 4940 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4404697..4405411 | 276..988 | 3195 | 98.3 | Plus |
| 3R | 32079331 | 3R | 4404465..4404639 | 105..279 | 860 | 99.4 | Plus |
| 3R | 32079331 | 3R | 4403202..4403280 | 30..108 | 395 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib4 | 2656 | transib4 TRANSIB4 2656bp | 64..105 | 1088..1129 | 111 | 73.8 | Plus |
FMO03130.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:30 Download gff for
FMO03130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| growl-RA | 151..1301 | 25..1169 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:23 Download gff for
FMO03130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lost-RA | 151..1301 | 25..1169 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:40 Download gff for
FMO03130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lost-RA | 124..1274 | 25..1169 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:40 Download gff for
FMO03130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4403195..4403280 | 17..108 | 91 | -> | Plus |
| 3R | 4404469..4404639 | 109..279 | 100 | -> | Plus |
| 3R | 4404701..4405419 | 280..994 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:23 Download gff for
FMO03130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 228917..229002 | 17..108 | 91 | -> | Plus |
| arm_3R | 230191..230361 | 109..279 | 100 | -> | Plus |
| arm_3R | 230423..231141 | 280..994 | 98 | -> | Plus |
