FMO03131.5prime Sequence
1248 bp (987 high quality bases) assembled on 2008-07-07
> FMO03131.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGTTGAATGTGTTTTTTT
TAACCAGCCTCTTTTATGCTGCAAGTGCCACCACATATGTGACCACCAAT
AATCACATCGAGATGCCCATATACCAGAAGCGTCCTTTGAGCGAGCAAAT
GGAGATGATTGATATCCTGGATTTGGGTGACCGTCCGAGACGACAGGCGG
AGCCCAATCTCCACAATTCAGCATCGAAATTCCTTCTCGAAGTTTACAAC
GAGATTAGCGAGGACCAAGAGCCCAAAGAGGTCCTGCATCAGCGCCACAA
ACGCTCGCTGGACGATGACATCCTGATTTCCAACGAGGATCGACAGGAGA
TTGCCAGTTGCAACAGCATCCTTACCTTTTCGAGCCGCTTGAAACCCGAG
CAACTGGACAACGAGCTTGATATGCACATTACCTTCAACACCAACGATGT
GCCAGTGGATTTGAGTTTGGTTCAGGCCATGCTCAGGATATACAAGCAAC
CAAGTCTGGTGGACAGAAGGGCGAACTTTACCGTGTCCGTGTACCGAAAA
CTGGACAATCGCCAGGACTTTTCCTATCGCATCCTGGGCTCTGTGAATAC
TACGAGCAGCCAACGTGGCTGGCTGGAATTCAATTTGACAGATACGCTGC
GGTATTGGTTACACAATAAGGGACTGCAACGTCGAAATGAGCTAAGGATA
TCAATTGGCGATTCCCAGCTGAGCACCTTTGCAGCTGGATTGGTGACACC
ACAGGCCAGCCGCACCAGTTTAGAGCTCTTTATTGTCGGCTATTTCAACG
GCCCCGAGCTGCTGGTCAAAATACAGAATCTTCGTTTCAAGAGAGATCTC
GAGAAGCGAAGGGCCGGGGGTGGTTCGCCACCACCTCCTCCGCCGCCGCC
CGTGGATTCTGCACAGACCACCGCAGTCCTGCGAGCGCTCTAACTTCACT
GGTGGATTTCAGGAGCTGCACATGCACGACTGGGGTGATAGCGCCCAAAA
AGGTTCGAGGCTTAATTTCCGGCGGCGGGCGGTTGCCACTTCCCGCTGGG
CACAAAATGAAATGCCCACAACAAGCCATCGTCCAAACCTGAGAGCACCC
TGAAGCAGCGCATTTGGCCAGCCCTGCTGTGGGCCCTACAGTTGGGTTGC
ATCACATATTCTGGCGGATATCCAGAAGACTTCTTCAACTGAACAGATCC
AAAAGCAATGTGTCAGGGAAAGTGCGGAGTGAGTTCTAGTGCTACGAA
FMO03131.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scw-RB | 1590 | CG31695-RB | 47..1174 | 32..1163 | 4925 | 96.6 | Plus |
| scw-RA | 1342 | CG31695-RA | 47..1174 | 32..1163 | 4925 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19699870..19700922 | 1089..32 | 4620 | 97.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:15 has no hits.
FMO03131.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:59 Download gff for
FMO03131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scw-RA | 108..1228 | 24..1150 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:54 Download gff for
FMO03131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scw-RA | 41..1161 | 24..1150 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:25 Download gff for
FMO03131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scw-RA | 41..1161 | 24..1150 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:25 Download gff for
FMO03131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19699808..19700928 | 24..1150 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:54 Download gff for
FMO03131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19699808..19700928 | 24..1150 | 96 | | Minus |
