FMO03132.5prime Sequence
1238 bp (1030 high quality bases) assembled on 2008-07-07
> FMO03132.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAAATTAACCAC
AAATATGAGTTCGACGACGATGTGGCCTCCATATGCGAGTCAACGGCCGC
CCTAACCGAGGGATGTCGTTTACCCGTCAGGATGCACAAAACGGACGACT
GGCCACTAGCGGAGATTGTGAGCATCAAGGAGTTGGATGGGCGCCGGCAG
TTTTACGTGCACTATGTGGACTTCAACAAGCGCTTGGACGAGTGGGTCAA
CGAGGAGGATCTGTACACGCGAAAGGTGCAATTTCCGCGGAGAGACGGCT
CACAAACAGGCACCAGCACTGGAGTGACCACGCCACAGCGCCACCATTCC
CTAGCGGGCAGCGTTTCTCGGCCTACATCACCGCAACACCCTGGTTCCGG
GGCTCTGGCAGCCATCCCCCAGACTCCTACTGGTGCATCAGGCAGTGTTC
CTCCCCCTGCTGGCATTCCAAACTCTGTGGCTCCACCCGGAACACCAAGC
AGTGGGGGAGAGCTTGTGAATGGCAACAATCTGGCCGCAGCCCTTCAGAA
ACGCATCAATCGCAAGCGAAAAAACCACGGAGGCTCGGCCCATGGACACC
ACAGTCTGACCAGTCAACAGCAGCAGTCACATCCGCATCCTACAACTCCG
CAGACACCCACGGCTACGCCCGTGCATGTGACCGGCGACGGTTTAATAAG
CGGAGCGGCCAATGATGATGGTGATGGATCGCAGGATGGCAAGACGCCCA
CGCCGAGGCAATCAGGCAGCATGGTTACGCACCAGGACGACGTGGTCACC
CGCATGAAAGAACGTGGAGATGATCGAGCTGGGCAGGCATCGCATTAAGC
CCTGGTATTTCTCACCCTATCCGCAAGAGCTGTGTCAAATGCCCTGCATC
TACATCTGCGAGTTCTGCCTGAAGTACAGGAAGAGCAGAAGTGCCTGGGA
GAGGCACCTGTCCAAGTGCAATCTTAGGCATCCCACGGGGAAACGAGATC
TTATCGCAACATTACATTTCCTTCTTTGGAAATCGATGGACGCAAAACAA
GGTGATTGCCAAGAACCTTGTGCTGCTTGCAAACTCTTTTCTCGAACAAA
GAACACTTCTACTAGAATACGAATCGTTTCCTTTCTACGTAATGAAAATT
CGACTGCGCGGCTTTCAAATATTAGGTACTCCAAGAAGGAGTCCAAGGAC
TCAACGGCCTGGCTATCTCTTACAAAGTGTACTCTGCT
FMO03132.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tip60-RC | 1852 | CG6121-RC | 98..1239 | 36..1176 | 5010 | 96.9 | Plus |
| Tip60-RB | 2368 | CG6121-RB | 591..1732 | 36..1176 | 5010 | 96.9 | Plus |
| Tip60-RA | 2390 | CG6121-RA | 636..1777 | 36..1176 | 5010 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4115703..4116544 | 1066..223 | 3735 | 97.8 | Minus |
| X | 23542271 | X | 4116599..4116726 | 222..95 | 640 | 100 | Minus |
| X | 23542271 | X | 4116792..4116852 | 96..36 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:52:29 has no hits.
FMO03132.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:04 Download gff for
FMO03132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 591..1599 | 36..1047 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:27 Download gff for
FMO03132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 636..1644 | 36..1047 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:45 Download gff for
FMO03132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 636..1644 | 36..1047 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:45 Download gff for
FMO03132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4115620..4116544 | 223..1148 | 96 | <- | Minus |
| X | 4116599..4116725 | 96..222 | 100 | <- | Minus |
| X | 4116793..4116846 | 42..95 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:27 Download gff for
FMO03132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4009653..4010577 | 223..1148 | 96 | <- | Minus |
| arm_X | 4010632..4010758 | 96..222 | 100 | <- | Minus |
| arm_X | 4010826..4010879 | 42..95 | 100 | <- | Minus |
