FMO03133.5prime Sequence
1031 bp (13 high quality bases) assembled on 2008-07-07
> FMO03133.5prime
CGTATAGCATACATAATACGAAGTTATCAATCCACATGTCATATGTACGC
CAGCTGAAGCGGCGGAACATGTCCCGATCCAAAAATTTCGGCAATGGCAA
TCCGTTCAACTACCGGGATCTCAACATCTTTCCCCAAGGTGCCTATGGAA
CGGTTTATCTAGCCCGCGATGTGATCACCGGCAACATAGTGGCGCTGAAC
AAAGTTAGGATATCGCTGAACGATAACGGTGTGCCAATGTCCACGCTGCG
GGAGATTTCGCTGCTGAAGCAGGTGAATGCCAGCAATCATGCGAATATTG
TCAAACTGTACGAAGTATGCCAGTTTCTGGAGCGCGACGGCCAATTGCTG
ATTCTGTTGGTTTTCGAACATGTGGAGCAGGATCTTTCGGATCTTATAGA
CAGACTTCCCAAATCGGGCCTGTCGCCGCCCATCATTCAGCGCTTGTCAA
GGGAACTACGGACCGGTGTGGACTTCTTACACTCACACCGTATCATCCAT
CGGGATCTTAAGCCGCAAAACCTGCTGGTCTCCTCTTGAGGCCACCTCAA
GATCACCGACTTTGGCTTGGCCAACACCTACGAATCGGAGATGAAGCTCA
CCTCCGTGGTGGTCACCTTGTGGTACCGCGCACACGAGGTTCTGCTCGCC
CAGCCCTACAACAGAACCGTGGACATCTGGAGTGCCTCCTGCCTCATCTT
CGAGATGTTCAATCGGCGCGCCCTATTCCCGGGCACCTCCGATAAGACTC
AGCTGGACCGCATCTTCAAACTGACCGGTATACCCACCGAGCACAGTGGC
CACATACCATTTCCGTGGACCTGGAACACTTTCCCAGCGGCATCCAGAGA
GATCCAAAGACTTTTGCCCACACCTGTGCAGTACGCCGATGATCTGTGAA
TAAAATGCTTTCCTACTACCTCCACCTGACGAGCATCCGACTTGACCTGT
TAGGAGCACGAATTACTTTCCGCAGGACCACTAGAAGCTTTCTAGATCAT
TCGTTGGCGCGCGCGCACGGTTAGTGCTCTC
FMO03133.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk4-RE | 1600 | CG5072-RE | 234..1177 | 36..977 | 3755 | 93.6 | Plus |
| Cdk4-RD | 1447 | CG5072-RD | 81..1024 | 36..977 | 3755 | 93.6 | Plus |
| Cdk4-RB | 2026 | CG5072-RB | 660..1603 | 36..977 | 3755 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16584347..16584676 | 438..767 | 1425 | 95.5 | Plus |
| 2R | 25286936 | 2R | 16582869..16583036 | 137..304 | 735 | 95.8 | Plus |
| 2R | 25286936 | 2R | 16584148..16584287 | 301..440 | 640 | 97.1 | Plus |
| 2R | 25286936 | 2R | 16584744..16584874 | 770..897 | 415 | 93.1 | Plus |
| 2R | 25286936 | 2R | 16580913..16581005 | 36..128 | 285 | 87.1 | Plus |
| 2R | 25286936 | 2R | 16584952..16585025 | 902..977 | 190 | 89.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:41:05 has no hits.
FMO03133.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:04 Download gff for
FMO03133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk4-RB | 632..1592 | 26..983 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:00 Download gff for
FMO03133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk4-RA | 425..1385 | 26..983 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:46 Download gff for
FMO03133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk4-RB | 650..1610 | 26..983 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:46 Download gff for
FMO03133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16584744..16584879 | 770..901 | 92 | -> | Plus |
| 2R | 16584152..16584282 | 305..435 | 97 | -> | Plus |
| 2R | 16584345..16584678 | 436..769 | 94 | -> | Plus |
| 2R | 16582864..16583036 | 129..304 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:00 Download gff for
FMO03133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12470369..12470541 | 129..304 | 93 | -> | Plus |
| arm_2R | 12471657..12471787 | 305..435 | 97 | -> | Plus |
| arm_2R | 12471850..12472183 | 436..769 | 94 | -> | Plus |
| arm_2R | 12472249..12472384 | 770..901 | 92 | -> | Plus |
