FMO03138.5prime Sequence
1243 bp (487 high quality bases) assembled on 2008-07-07
> FMO03138.5prime
GTATAGCATACATTATACGAAGTTATCAATCGACATGGACATGGCCAGGA
GCATTTTTGGCCGCGACCATGAGGGTTACGTGGGCCGTGAAGAGCATACG
CGCAAACTGCAGAACCTGGGCTCGGAAGACGATCTGGGAGAGCTGCCGCC
TATGATGGAGGAACTAAGTGTGGCCGATGGCCTGCGACCAAATCCCGGTG
GGCCATTCTCCGCTCTTACCGCCTCCATGTGGCCACAGGAAATCCTAGCC
AAGCTGGGCGGTGGCGCGGAATTGGCTTCCGGCCCAAACGACCAGCCGGA
GTACCGTTTTGACGAATTTGGCTTCCGGGTGGAGGAGGAGGACGGTCCGG
AGCAGAGCTCAACAAATTGCTGAGCATACCCTTTGTAGAGGACGCGCAGC
ATCGATTGCAGTGGATCGCCCACCTGGAGTTCTCACACAACAAGGAGGCT
GCCGAGCTGAGCTGGGAGCATGTGGATGTAATGCTCCCACGCACAGAAAA
GCTGCGCAATATGGTCCGTCAGGGTATCCCGCACACGTTGCGTGCCCAGA
TGTGGATGCGTCTATCAGGAGCGTTGGCCAAGAAGCAAAAGAGCGAGACC
AGCTACCACGATATAGTTAAAGCTTCTAGCAATGACCAGCTGATGACTTC
GAAGCAGATCGAGAAGGACCTTTTGCGCATCCTGCCAACAAATGCCTGCT
TTAGCAATCCGAATGGGACAGGCATTCCCCGATTGCGCCGCATTCTGAGG
GGCATCGCGTGGCTTTTTCCTGACATTGGCTACTGTCATGGCACCGGAGT
GATCGTTGCCTGTCTGCTTCTCTTCATGGAGGAGGAGAACGCCTTTTGGA
TGATGGCCACCATTGTAGAGGATCTGCTGCCAGCTTCCTACTACAGCTCA
ACTCTTCTGGGAATTCAAGTCGACCAACGCGTGATGCACACGCTTATTGC
AACTTACTGAGCATCTTGGACGAGTCCTTGCATAAGCACGACATCTAGCT
GTCTTTAATCACGCTGCATTGTTCCTCACGCTTTTTGCCACGTGATGCAT
ATGTATGATTCTTTGTGCGTATCTGGGACTGATTCTTTACAAAGGTCCCA
TCAGCTGATCCGTTGACTTCTGTTCATGTCTCAACGGCACGAACAGACTC
TAGACATCTCCGCGAACTCCTCAGATTTCAGTCAGTTCGAACTTTCTGTG
AGGATCCGTGAATGACAAAGGTCTCTCTTCCTCCAGCCGCTTG
FMO03138.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12241-RA | 2986 | CG12241-RA | 155..1211 | 34..1088 | 4965 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15219545..15220068 | 100..622 | 2555 | 99.6 | Plus |
| 3R | 32079331 | 3R | 15220128..15220596 | 621..1088 | 1940 | 96.6 | Plus |
| 3R | 32079331 | 3R | 15219410..15219476 | 34..100 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:00:18 has no hits.
FMO03138.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:48 Download gff for
FMO03138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-RA | 149..1220 | 34..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:23 Download gff for
FMO03138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-RA | 155..1226 | 34..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:55 Download gff for
FMO03138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-RA | 155..1226 | 34..1102 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:55 Download gff for
FMO03138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15219410..15219476 | 34..100 | 100 | -> | Plus |
| 3R | 15219546..15220068 | 101..622 | 99 | -> | Plus |
| 3R | 15220130..15220616 | 623..1109 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:23 Download gff for
FMO03138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11045132..11045198 | 34..100 | 100 | -> | Plus |
| arm_3R | 11045268..11045790 | 101..622 | 99 | -> | Plus |
| arm_3R | 11045852..11046338 | 623..1109 | 95 | -> | Plus |
