FMO03140.5prime Sequence
1215 bp (1052 high quality bases) assembled on 2008-07-07
> FMO03140.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCTAAGTTTC
TGGACATGCTATCGGGGAGCCAGTGCGTCAGCCTGGAAAAGTGCGGCGAT
GTGGTGGTCTCAACCAACGACTGTATGATTGCACTTTACTGCCACTTCTG
CCGTGACCTCTTCACACAACTGCCGGAGTTCTTAAGACACCTCCAAAGCA
ACCATTCGGATGTGCTGCACTTCACCAAGGAGCACAACGTTTACAGCGTG
GAGGAGCTGTTGTCCGGTGAGCAGGGTAAAGCCCACGAGGACGCCCAGTC
GGCGGGGCACAACAGCAGCAGCGGTGACTCTAGTTCACTGATGAATTCAG
AGGATTCTAGGGCCATCGAAGGCTCAGAAGATAACTCAGACAATAGCCCA
ATGAAACCTGAACAAATAGGGAAACAGAGTGAAATAAACCTGCTAGCGGA
AGTGACAAACATTTTATTGCAAACCAACGACAAGGAATTAAAACCCGAAA
ATGGCGTATTCAACAGACCACGCAAAAAGGCTAATAACGAGAGCAGTTCT
TTGAAGATATGCGATCTGAAGAGTCACACTATTGCAAGGACTTCGCGAAA
GCGAATGAGCATGGTAAAGAACCGCATCCTGCGAGTCCTTGACAGCGATT
TGTCTGCAAAGCTTGAAATTAAACCTCCAGAGCCCAACTCCAAACTTTCT
ATAACTGAGCCCATCCAAGAAGACAACATACCTGGAACATGTTTTGACAC
TCCTACAAAGCCCATACCGAGCTCATCTCAATTAAGTGTAAGAAAGTCTT
CTTTAACAGAGGCAAACCAAATATGTACCAAATATGCCGAGAAGAAAACG
GCGCCTACCATGCCTAAGCTACTGAACTGTGTACCAAAGCCCATATTAAC
TAGTCAACAAGCTCATACTAATGCCGAGATAAGTGAGATAAATGAAACCT
ATCACCTAGCAGCTAGTCAAGTGACAAAACCACGAAAACATTTCCCGTAA
AATAACACAAATAGATATTTTTACAACAGTAAGGTACCTAAAACTTTAAT
AACCACCATCATGAAGAGGGTGTCAGTGACCAGGTGGAAAATAGCACGGA
ATAATTATAAACAATGCCAAGTCTGGCGAAGAAAAACACAAAAAAGTTTT
TAAAGTACGATTAGATAAGGCCAGGCGTTCCCATACAAATTTTTAAAAAA
TATATAAGGTCCGAA
FMO03140.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tef-RA | 2168 | CG8961-RA | 104..1221 | 38..1151 | 5230 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17055551..17056298 | 1151..408 | 3190 | 97.2 | Minus |
| 2R | 25286936 | 2R | 17056363..17056732 | 407..38 | 1850 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:39:07 has no hits.
FMO03140.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:09 Download gff for
FMO03140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tef-RA | 93..1213 | 38..1154 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:39 Download gff for
FMO03140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tef-RA | 104..1224 | 38..1154 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:20 Download gff for
FMO03140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tef-RA | 104..1224 | 38..1154 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:20 Download gff for
FMO03140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17055551..17056298 | 408..1151 | 97 | <- | Minus |
| 2R | 17056363..17056732 | 38..407 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:39 Download gff for
FMO03140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12943056..12943803 | 408..1151 | 97 | <- | Minus |
| arm_2R | 12943868..12944237 | 38..407 | 100 | | Minus |
