Clone FMO03145 Report

Search the DGRC for FMO03145

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:31
Well:45
Vector:pMK33-CFH-BD
Associated Gene/TranscriptKrn-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03145.5prime Sequence

704 bp (704 high quality bases) assembled on 2008-07-07

> FMO03145.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGAGCCCAGGAT
CTGCTGCTGCTTGCCACCGCTTTAATCGGCGCTTACCTACCGCTCACCGC
CGCCTGTTCCTCGCGTGCCATCGCTAAGCCGCGGCCAACAGCTGCACCGA
TCCTGCCGCCGGATAATGTGGAAATATCCACAACGCCGAGACCGAATGTC
ACCTTCCCGATCTTCGCCTGTCCACCGACCTATGTCGCCTGGTATTGCCT
GAACGATGGCACCTGCTTTACGGTGAAGATCCACAATGAAATCCTATACA
ACTGCGAATGTGCGCTGGGATTTATGGGTCCGAGGTGCGAGTACAAGGAG
ATTGATGGCTCGTACCTGCCAACCAGGAACCGTGTGATGCTAGAGAAGGC
CAGCATTGTTAGCGGAGCAACGCTGGCCCTTCTGTTTATGGCCATGTGCT
GTGTGGTTTTGTATCTGCGACACGAGAAGCTGCAAAAACAAAAGCTGCAC
GACAGCACCACAACCACAACGACCGACGGTGGCTGTCAGAACGAGGGCAT
GGACGAGGTGGATGGCTTGCGACCCTTACGTCCAGTGAGACGTCCCTTTG
GACCCTGCCGCATCCTATCGCTGGAGGAGGCCCACCTTCAAGCGAAAGCC
TCCAATCGCCCCAGGCATTGCAACGAACTTTTGCGCGCAAGCTTTCTAGA
CCAT

FMO03145.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
Krn-RA 1354 CG32179-RA 384..1034 36..686 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17649882..17650532 686..36 3255 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:39:25 has no hits.

FMO03145.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:10 Download gff for FMO03145.5prime
Subject Subject Range Query Range Percent Splice Strand
Krn-RA 367..1035 22..693 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:45 Download gff for FMO03145.5prime
Subject Subject Range Query Range Percent Splice Strand
Krn-RA 371..1039 22..693 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:31 Download gff for FMO03145.5prime
Subject Subject Range Query Range Percent Splice Strand
Krn-RA 371..1039 22..693 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:31 Download gff for FMO03145.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17649877..17650545 22..693 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:45 Download gff for FMO03145.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17642977..17643645 22..693 98   Minus