FMO03146.5prime Sequence
1255 bp (1063 high quality bases) assembled on 2008-07-07
> FMO03146.5prime
GTATAGCATACATAATACGAAGTTATCAGTCGACATGGCCCCCAACTTGC
TAACAATCGGATTACTTTTGACCCTGATCGCCAGCGGTCAGGCCCATCTC
AATATTTTCCTCAACTTGCACGAGGTGCTGCGCCTAATCGGAGTCTCGGC
GGAGCTTTACTACGTGCGGGAGGGCGCCATTAACGACTACGCCTTGAACT
TCGCCGTGCCCGTGCCGGCGAACATCAGTGACGTGACCTTTACGTGGCAA
TCCCTGGTGGACCATCCGCTGCCCTACAGCATCAATATCGCCACATCGGA
CACGGAGGTGTTGCCGCGACCCATTCTGAACATATCCCGGATCGGGGATG
TGCCCGTGGAGCCACAGACATGGGGCATTGCGCTCAAGTGCTCGGGCACC
AGGAATGCCGAGGTTACGGTCACCATAAATGTGGAGGTCATTCTGGATCG
GGCTACCAATAACAATACGAATCTGATCTTCAAAAGGAAGAAGATCTGTT
TGAGGGAGGAACAGGACAGTGCGCACGAGGAGTACGACGACGATGACTTG
GACTTGCTGCAAACGGCGCGTAAGGGACATGGCGGAGATATTCACTATGT
GGATCGAAACGATGAGCATGTGGTCGCCAATGGACACCAGGCGCCGGAGA
AGCAACGTCCGGTTGTCACAGAGTCGCCAGTGGGCCGTGGAAACTCCGGT
GGATCGAAGCGCGACTTTGACCCGATGCTGAGGGAGAACCTGGTGCCACC
GGCCAGTGGCCTGGTTACCCTAATTGTGGGTGGCATTCTGGCTCTGGTCC
TTGTTTCCACCCTCATCCTGATAGCCTACTGTGCCAAGGGCCCGTCCAAG
CGACATCCTTCGAACGGAGTGCATCTCATCAAAACCTCTAGCTTCCAGAG
ACTGCCCACCATATCGTCGACGGCCCACAACTCGATCTACGTCTGCCCAT
CGACCATCACTCCTACATATGCCACGCTGACGCGGCCCTTTCGCGATATG
AAGCATGAGCCTGAAGGAGTTCAACCGCCGTCTCCAAGAAGCTGACAGTC
CAAAAGTGCGCGTCGGCTTTTCTGCCTCGTCAGGAGGGAAACTTTGGGGC
CGATCTATCGCGCACTATACCGACTGCCCAGGAGTATTGGGTCAGACTTG
GGGTCAACAGCCAGGCAACGTGCAAGTGAGTCGCTGTCTAGAGTCTGGAT
GCTGTCAAGAGCCTCTCCATCTCGAAAATGTCCCTTCTCTCCGTCCTGGT
GGGTA
FMO03146.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drl-RB | 3104 | CG17348-RB | 388..1534 | 35..1179 | 5205 | 97.7 | Plus |
| drl-RA | 3104 | CG17348-RA | 388..1534 | 35..1179 | 5205 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19205720..19206679 | 140..1098 | 4455 | 98.8 | Plus |
| 2L | 23513712 | 2L | 19190729..19190835 | 35..141 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:27:32 has no hits.
FMO03146.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:58 Download gff for
FMO03146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drl-RA | 384..1468 | 35..1119 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:11 Download gff for
FMO03146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drl-RA | 388..1472 | 35..1119 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:01 Download gff for
FMO03146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drl-RA | 388..1472 | 35..1119 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:01 Download gff for
FMO03146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19190729..19190834 | 35..140 | 100 | -> | Plus |
| 2L | 19205721..19206679 | 141..1098 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:11 Download gff for
FMO03146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19190729..19190834 | 35..140 | 100 | -> | Plus |
| arm_2L | 19205721..19206679 | 141..1098 | 99 | == | Plus |
