FMO03147.5prime Sequence
1248 bp (1043 high quality bases) assembled on 2008-07-07
> FMO03147.5prime
TCGTATAGCATACAAAATACCAAGTTATCAGTCGACATGTTTGCTACACT
GAAAAACAAGATCAAGGAGGAAACTGGCGATGATGTGGTCCAATCAGCCA
ATCAACGTTATCCCGGCAACAACAACAACAATTACCGGCTACGTAGTCGC
CGCGTTAGCATTAATTCCAACTCAGCTGATGATGTGGGCGGTGGCGGATT
CTACAATGAGTCGGAGCAATTGTGCGAGCTGCGAAGTCAGTGCAACGAGC
TCACCACGAAGCTGTCCACCGTCACGCAGGGATTGCAGCAGCTGCAGGAG
GAGAAGACGCGCGTGGACAAGACCAACGAGATTCTGCTAGAGAGTGTGCG
TGTGGCCCAGACGCAGAAGGACATATACTGCGAGGAGCAGGAGAAGATTC
AGAATCTACAGCAAATCGAGATTGACAAGCTGAAGAATCTGCTTAGCTTT
CGGGAGCAGGAGTCGGTGGATCGCATGGGTCTCATGCGCCAGCAGACCCA
GCAAATCGAGTCCTTGAGCGAGGAACTAGAACGTCTGCGTCCCATTGAAT
CCGTGGCCGAAGATTTACGCGACGAACTAGAGCAACTGCGACATTCTACA
CAGCAGGAGAAGAATCTGCTGACCACAACACTGGCGGCTGTACAGGAGGA
GAACCGGCACCTCAAAAAGCGCATGAAAATCGTCGAGGAGTCGCGACTCG
AGTCTCTGGGCAAACTGAACTCCGAGCAACAAGTGCAAGCCCTTATCCGG
GAACATAAACTGCTGGAACAGCACTTAGAGGAGGCCCATCTGCAGTTGTC
GGACATCAAAGGCTCGTGGAGTGGCCAGAATCTGGCGCTGGAAACCCAAG
TTAGTCGTCTATCCCAGCAAGTGGCCCGAAGAGACCACCGAAAAGCGAAA
GGGCCCTTAAATCCCGCGACGATGCCATTGAAAGCCGCAAGCAGGTATCA
TTCGAACTCGAAAAAGCAAAGATGAAATAAAAGCAGCGGGACGATAGGTC
AAGCTGCTGGAAGGAGGAAATCGATGATCTTAGTGTGCCCTGAAAGAAGT
GCCGAGAGGAAACCGAGCCAGCAAGGTCCTCTTGGGCGCAATAATTCCTC
AAATTGGAACGGAGTAAAGAATCTCAAGACCCGCCCTCAGGCAAGCGAGT
GACAGGTTCAAGCGAGGATACTTCTTGATGGCGAGCAGGGTGCCAAAGCT
TACGTCGGGGTTACTGTAAAGCAGAGACAGCGCGTGAGCAACACATAT
FMO03147.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbs-RC | 2227 | CG4840-RC | 240..1389 | 37..1189 | 5020 | 96.6 | Plus |
| cbs-RB | 2233 | CG4840-RB | 240..1389 | 37..1189 | 5020 | 96.6 | Plus |
| cbs-RA | 2257 | CG4840-RA | 240..1389 | 37..1189 | 5020 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13451088..13451873 | 209..996 | 3730 | 99.4 | Plus |
| 2R | 25286936 | 2R | 13450825..13450998 | 37..210 | 870 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:34:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 2129..2183 | 849..903 | 113 | 67.3 | Plus |
FMO03147.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:06 Download gff for
FMO03147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbs-RA | 162..1204 | 37..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:29 Download gff for
FMO03147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbs-RA | 240..1282 | 37..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:38 Download gff for
FMO03147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbs-RA | 240..1282 | 37..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:38 Download gff for
FMO03147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13450818..13450998 | 26..210 | 96 | -> | Plus |
| 2R | 13451090..13451875 | 211..997 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:29 Download gff for
FMO03147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9338323..9338503 | 26..210 | 96 | -> | Plus |
| arm_2R | 9338595..9339380 | 211..997 | 99 | -> | Plus |
