FMO03149.5prime Sequence
1236 bp (1065 high quality bases) assembled on 2008-07-07
> FMO03149.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGCCGTTGACCAAGA
GTTTGCCAAATTCTCCGTCGCTTTTGAAGCGCGCCGGCACCGAAAAGTTG
CGAGAGGTGTTCCTGAAGTACGCATCCATCCAGAAGAATGGCGAGCACTA
TATGACCAGCGAGGACTTCGTGCGAAAGTTCCTGGGACTCTTTTCCGAAT
CTGCATTTAATGACGAATCGGTGCGCCTGCTGGCCAACATTGCGGACACG
AGCAAGGATGGACTCATCTCCTTCTCGGAGTTCCAGGCGTTCGAGGGTCT
GCTCTGCACTCCAGATGCCCTCTACAGGACCGCTTTCCAGCTGTTCGACC
GCAAGGGCAACGGCACTGTTTCCTATGCTGACTTCGCTGATGTCGTACAA
AAAACTGAACTGCACTCAAAGATACCTTTTAGCTTAGATGGCCCCTTTAT
CAAGCGCTACTTTGGTGATAAGAAGCAACGCCTTATCAACTATGCTGAGT
TCACGCAGCTGCTGCACGACTTTCACGAGGAGCACGCGATGGAGGCCTTC
CGCAGCAAGGATCCAGCTGGCACTGGGTTCATCTCGCCATTGGACTTCCA
GGACATCATAGTTAATGTTAAGCGGCATTTACTGACCCCCGGCGTCAGGG
ACAATCTAGTTTCGGTAACTGAGGGTCACAAAGTGAGCTTCCCGTATTTC
ATCGCATTTACCTCGCTGCTGAACAACATGGAACTGATCAAACAAGTCTA
CCTGCACGCCACCGAGGGCAGTCGCACGGATATGATCACCAAGGATCAGA
TCCTCCTCGCCGCCCAAACGATGAGCCAAATCACGCCGCTGGAGATCGAC
ATACTTTTCCACCTGGCGGGCGCCGTCCATCAAGCAGGCCGCATCGACTA
TAGTGACCTGAGCACATCGCACCCGAGCATTACACCAAGCATATGACACA
TCGTCTGGCGGAGATCAAGGCGGTGGGAGAGTCCTGCGGACCGATCTGCC
TTTATCCAGGTCCTGGAGAGCTCTTACCGTTTCACTCCTCGGTCCTTTGC
GGGCGCTGTGGGGCGCACTGTGTCTACCCCATCGAATCTAGTCAGACCTC
GAATGCAGACAGCGAGCGGGTTCCTAATTGGTTGAGTGCTATCGAACTCA
TGGGAACTGCCTTCAAGTGTTCGCACAGGATCTGGTCCTCTACACAAGTT
CTTGCTCTAGCTAAAGGGGGCCGTGGTGCCTCCTCG
FMO03149.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aralar1-RF | 2770 | CG2139-RF | 152..1287 | 35..1166 | 5215 | 98.1 | Plus |
| aralar1-RD | 2340 | CG2139-RD | 152..1287 | 35..1166 | 5215 | 98.1 | Plus |
| aralar1-RA | 2770 | CG2139-RA | 152..1287 | 35..1166 | 5215 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30448346..30448570 | 888..664 | 1125 | 100 | Minus |
| 3R | 32079331 | 3R | 30448632..30448829 | 667..470 | 990 | 100 | Minus |
| 3R | 32079331 | 3R | 30449042..30449208 | 381..215 | 820 | 99.4 | Minus |
| 3R | 32079331 | 3R | 30449806..30449959 | 215..62 | 770 | 100 | Minus |
| 3R | 32079331 | 3R | 30447412..30447579 | 1055..888 | 655 | 95.3 | Minus |
| 3R | 32079331 | 3R | 30448896..30448988 | 469..377 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:39 has no hits.
FMO03149.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:34 Download gff for
FMO03149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aralar1-RD | 147..1268 | 27..1146 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:31 Download gff for
FMO03149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aralar1-RA | 147..1268 | 27..1146 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:10 Download gff for
FMO03149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aralar1-RA | 147..1268 | 27..1146 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:10 Download gff for
FMO03149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30448896..30448987 | 378..469 | 100 | <- | Minus |
| 3R | 30449046..30449208 | 215..377 | 100 | <- | Minus |
| 3R | 30449807..30449959 | 62..214 | 100 | <- | Minus |
| 3R | 30450229..30450260 | 27..61 | 91 | | Minus |
| 3R | 30447412..30447578 | 889..1055 | 96 | <- | Minus |
| 3R | 30448346..30448569 | 665..888 | 100 | <- | Minus |
| 3R | 30448635..30448829 | 470..664 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:31 Download gff for
FMO03149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26274357..26274551 | 470..664 | 100 | <- | Minus |
| arm_3R | 26274618..26274709 | 378..469 | 100 | <- | Minus |
| arm_3R | 26273134..26273300 | 889..1055 | 96 | <- | Minus |
| arm_3R | 26274068..26274291 | 665..888 | 100 | <- | Minus |
| arm_3R | 26274768..26274930 | 215..377 | 100 | <- | Minus |
| arm_3R | 26275529..26275681 | 62..214 | 100 | <- | Minus |
| arm_3R | 26275951..26275982 | 27..61 | 91 | | Minus |
