FMO03150.5prime Sequence
1224 bp (1040 high quality bases) assembled on 2008-07-07
> FMO03150.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGTGTTCTGGA
ACAGCTGGGTGCTCTAGATATCGGTACAAATGAGCAGGTGGACGAAACGC
TGCAGCGGATTGCCGACGAAGAGGCAAAAGTTAACGAGAAACTGGAGTCG
CTGCTGGCCAAACAATGCCAGATTGAGGCCAAAATGAGTGGCATTGGGCG
ATCACTCAGCCTGCTTCACACGGTGGACAGCGATTCCAACAAGCTGAACG
ACCAGATCGTAAACACTGCCCAGTTGGCCGAATCGGTGAGCGCCAAGGTG
CGCCGTTTGGATTTGGCCAGGTGCCGTGCCTCCGAGTGCCAGCAGCGGGT
GCACGATCTGATCGACCTGCATCTGTGTAGCCAGGGCGTGGTGAAGGCCA
TCGGCGAGGAGGACTACGAGAAGAGTGCCACCCACATTGCCCGCTTCCTG
GCGATGGATCAGCAATTGCTGCGGCGCACCGCCGACGACGTTCAGGGCTC
CATAACGTCGGTTAGCGATGCGGTCAAGACGCTGGAGGATGCCACCGAGA
AGACCCGCGTGCTGATTGCCAAGCGCTTCGATGAGGCAGTCAAAGCCGAT
GATTTGGCCTCTGTGGAAAGATTCTTCAAAATCTTTCCACTAGTCGGTTG
CCATCGCACCGGAATCGAAAAGTTCTCGCTCTACATTTGCCAAAAGCTGG
CAAACAAGGCGCAGAAGGAACTAAGGAACGCCCAGGACATAGCCAAGGCG
GAATCGCGCCTGCAATTGGCCTACGCAGATCGGCTGACTGCTATTTTGGA
AAACTTCGCCAGGGTGGTGGAAGTCAATCAGCCGATAATCGAAGCCTTTT
ACGGACAAGCTTCATCATCACTCATCGACATGGTGTCCATACTGCAGCAC
GAATGCGATACGGAGGTGAGAATCTTCTATTGAGTTCAACAAGAACCCGG
CAGATCCAGTACCGCAGCAAGCAAGTAAATGAATTCCACTTCAGCGTCGC
CGTGACGGAAATCCTCAGGAGCACAGCATCCAAGCACTGGGTCATTATAG
AAACCATCTGGCGGCTCGTTGACAGCTAATCCAGAAATCGATGCCATTAT
AGCTGAATAACCGTCATGCCGCAGGGTCAGCTGTACCTCCGATTATGCTT
CGGACTACGTACATTGGGAACGTGGTGCGAAAGAGACAGTTGGTATATAG
TGGACAGCCTTTAGTGACAAGACT
FMO03150.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7456-RA | 2666 | CG7456-RA | 126..1256 | 37..1153 | 5030 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10487617..10488355 | 860..122 | 3695 | 100 | Minus |
| 2L | 23513712 | 2L | 10487349..10487559 | 1068..861 | 520 | 91.6 | Minus |
| 2L | 23513712 | 2L | 10488410..10488497 | 124..37 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:49:04 has no hits.
FMO03150.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:51 Download gff for
FMO03150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7456-RA | 120..1247 | 29..1144 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:03 Download gff for
FMO03150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7456-RA | 119..1246 | 29..1144 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:55 Download gff for
FMO03150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7456-RA | 119..1246 | 29..1144 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:55 Download gff for
FMO03150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10487617..10488353 | 124..860 | 100 | <- | Minus |
| 2L | 10488411..10488504 | 29..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:03 Download gff for
FMO03150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10487617..10488353 | 124..860 | 100 | <- | Minus |
| arm_2L | 10488411..10488504 | 29..123 | 96 | | Minus |
