FMO03153.5prime Sequence
1221 bp (349 high quality bases) assembled on 2008-07-07
> FMO03153.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAATCCACATGTTTTCGGGC
CTAACAAATCATTTCTCCTCCCTGGTGGGCGCCGTTAAAGGAGGCGCTGG
CGACGAGGATGTGCCCGCGCCCACAGGAGATGCGCCCGCAGCCGCTCCAG
CAGCATCCACTTCCGTGGAGGCCACGGCCTCCTCCGCCGTGGACCCGGAG
GCAGCTGCCGCAGCCGGTGGTTAATGACTCGAGGGCGAGGAAGCTGGCAA
AAGACTTCCCAAATCCGCCTCCCTGGTTGATTCATTAGTATCCGAAGCCA
CCGGATGGCTGGGCAGTGCCAAGGGTTGGCTGGGAAACGCCTCGATACCG
TCGATGCCACCCATGCAGTCGATGCCATCGATGCCGGCCATGCCATCGAT
GCCGTCTATACCATCCATCCCGGGACTCCGCAGGGGCGCAGGAGCCGATG
GAGCCGAGGGCGCCCAGGGAGCTGTCGCCGGAGAGGGCGGGGCCGCCGCC
AGTGGAGCCGTGAGTGGTGGCGAGGATGACGACAAGTCTAGGTATATTAG
CGCCACGGAGGGCACCGACTCACATCCTGCATCGGGCGGTGGCACGCCCA
CCGGCGACAAGGGTCAAATCGGACAGGGTAAGGCCGATGAAGTCAAAATT
ACCACATAAGTAACACAGCACGCCATACACTTTGTATCCTTCTTGTCATC
CGCCATCAGCAAGGGTGGCGGCAAATCAAGGATACTGTCAAGGATAATAC
CCTTCTCGACTCGTTCAACGAGGAACAAGAAGCTTTCATCAAGGGCCAGA
GAGGCGTGCGCAATGGAGCAGCCCCCTGGATCAGACACGCCAACGAGGCC
AAGATCAATGAGGAAATCCTTGGCCTGTCGCAGGATCGCCGCAACTTCGT
GCCGCGCCCCGCTTGCCGGCGTGACTTTGAGTTTAGCTACGACATCGCCT
ATCCTACGACATAGCCATTATGGTCCGACGACAGCGCTCGACACGATGCG
ATTCGAGCTGGAGACCAAGATCATCACTGATGGAAATTTTGCGCATCACT
TCTACTGCTTCCTCCCTGATCATCAGTTCGACGAGTGGAACTCTAGGATG
CCGATGGCATGGAACTGCCCTCAGTCTGTCAAATGCCCACGCACTGTGCC
CTAAAGAAAGAATCCCACACTGGCGATCAGTCTTGCCAGTTTCAGGTCAA
GCCTTTTGCGAACCGGCAAAG
FMO03153.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sap47-RE | 4989 | CG8884-RE | 760..1842 | 37..1112 | 4210 | 93.3 | Plus |
| Sap47-RD | 5171 | CG8884-RD | 942..2024 | 37..1112 | 4210 | 93.3 | Plus |
| Sap47-RC | 4843 | CG8884-RC | 614..1696 | 37..1112 | 4210 | 93.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15951602..15951850 | 302..550 | 1110 | 96.4 | Plus |
| 3R | 32079331 | 3R | 15936124..15936340 | 37..253 | 980 | 96.8 | Plus |
| 3R | 32079331 | 3R | 15954747..15955021 | 749..1021 | 895 | 92.4 | Plus |
| 3R | 32079331 | 3R | 15954156..15954259 | 549..652 | 445 | 95.2 | Plus |
| 3R | 32079331 | 3R | 15954583..15954683 | 649..748 | 335 | 91.1 | Plus |
| 3R | 32079331 | 3R | 15944947..15944996 | 252..301 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:51:32 has no hits.
FMO03153.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:59 Download gff for
FMO03153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap47-RA | 1006..2016 | 37..1044 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:49 Download gff for
FMO03153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap47-RC | 614..1624 | 37..1044 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:10 Download gff for
FMO03153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap47-RC | 614..1624 | 37..1044 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:10 Download gff for
FMO03153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15944949..15944996 | 254..301 | 100 | -> | Plus |
| 3R | 15954158..15954255 | 551..648 | 95 | -> | Plus |
| 3R | 15951602..15951850 | 302..550 | 96 | -> | Plus |
| 3R | 15954583..15954683 | 649..748 | 91 | -> | Plus |
| 3R | 15954747..15955021 | 749..1021 | 92 | == | Plus |
| 3R | 15936124..15936340 | 37..253 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:49 Download gff for
FMO03153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11770671..11770718 | 254..301 | 100 | -> | Plus |
| arm_3R | 11777324..11777572 | 302..550 | 96 | -> | Plus |
| arm_3R | 11779880..11779977 | 551..648 | 95 | -> | Plus |
| arm_3R | 11780305..11780405 | 649..748 | 91 | -> | Plus |
| arm_3R | 11780469..11780743 | 749..1021 | 92 | == | Plus |
| arm_3R | 11761846..11762062 | 37..253 | 96 | -> | Plus |
