FMO03154.5prime Sequence
1235 bp (1065 high quality bases) assembled on 2008-07-07
> FMO03154.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAAATGCGTCTG
AATGCGGCTTCCATATGGCTGTTAATACTGTCGTATGGAGCAACTATTGC
TCAAGGAGAAAGAACCCGCGATAAGATGTACGAGCCCATTGGAGGAGCTA
GCTGTTTCCGACGGCTGAATGGCACCCATCAGACAGGCTGTTCCTCAACC
TACTCCGGTTCCGTGGGCGTACTACATCTAATAAACGTCGAGGCCGACCT
GGAATTTCTTCTTAGCAGCCCACCATCTCCACCTTACGCCCCCATGATAC
CACCTCACCTGTTCACACGTAACAACCTGATGCGCCTAAAGGAAGCCGGA
CCAAAGAACATTTCTGTGGTGCTGCTGATCAACCGCACGAACCAGATGAA
GCAGTTCTCGCACGAACTCAACTGCCCCAATCAGTACAGCGGCCTGAACA
GCACCAGTGAGACCTGCGACGCCAGCAATCCAGCCAAAAACTGGAATCCC
TGGGGCACTGGACTTCTGCACGAGGACTTTCCCTTTCCTATCTATTACAT
AGCCGATTTGGATCAGGTCACCAAGCTAGAGAAGTGCTTTCAGGACTTTA
ACAACCATAACTACGAGACGCACGCGCTGCGTAGCTTGTGCGCCGTCGAG
GTCAAGTCCTTTATGTCCGCCGCTGTCAACACCGAGGTCTGTATGCGCCG
CACCAACTTCATCAATAATCTTGGAGGAAGCAAGTACTGCGATCCGCTCG
AGGGACGGAATGTTTACGCCACCTTGTACCCCCGAAAGCCAGCAATCGAA
AACAACTTGGAGACAGTCCATACGAATGAAAAGTTCATATTAGTAACCTG
TCGCCTGGACACCACCACCATGTTCGATGGCGTCGGTCTTGGAGCCATGG
ACTCCCTCATGGGATTTGCTGTTTTCACTCATGTGGCGTATCTATTAAAA
CAACTACTTCCGCCGCAAAGCAAAGACCTTCATAATGTCCTCTTTGTGAC
TTTAATGGCGAATCCTATGACTACATTGATTCTCAAGATTTGTATACGAA
CATGAGAAACTTCAATTCTTACTGAATCCCACAGCACGCCCTCCGATTGC
CTTGACAATTTGACTTCATGCTGACACTCGGACACTGGATGACTATCGAA
TATAGGCGTGCAGTGCCTATGACGACTGGTTCGCATTTCAACGCTAATTA
CATTGCCGAAGTCCACGCGCCATAGGTGCTTATTA
FMO03154.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nct-RE | 2631 | CG7012-RE | 49..1172 | 36..1153 | 5260 | 98.6 | Plus |
| nct-RD | 2606 | CG7012-RD | 49..1172 | 36..1153 | 5260 | 98.6 | Plus |
| nct-RC | 2768 | CG7012-RC | 49..1172 | 36..1153 | 5260 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24851986..24852677 | 196..887 | 3460 | 100 | Plus |
| 3R | 32079331 | 3R | 24852737..24853011 | 885..1153 | 785 | 92.4 | Plus |
| 3R | 32079331 | 3R | 24851837..24851933 | 99..195 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 24851649..24851712 | 36..99 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:21:16 has no hits.
FMO03154.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:10 Download gff for
FMO03154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nct-RA | 56..1198 | 26..1166 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:58 Download gff for
FMO03154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nct-RC | 42..1184 | 26..1166 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:01 Download gff for
FMO03154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nct-RC | 42..1184 | 26..1166 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:01 Download gff for
FMO03154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24851642..24851712 | 26..99 | 94 | -> | Plus |
| 3R | 24851838..24851933 | 100..195 | 100 | -> | Plus |
| 3R | 24851986..24852675 | 196..885 | 100 | -> | Plus |
| 3R | 24852738..24853023 | 886..1166 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:58 Download gff for
FMO03154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20677364..20677434 | 26..99 | 94 | -> | Plus |
| arm_3R | 20677560..20677655 | 100..195 | 100 | -> | Plus |
| arm_3R | 20677708..20678397 | 196..885 | 100 | -> | Plus |
| arm_3R | 20678460..20678745 | 886..1166 | 93 | | Plus |
