FMO03155.5prime Sequence
1237 bp (1062 high quality bases) assembled on 2008-07-07
> FMO03155.5prime
TCGTATAGCATACATAATACGAAGTTATCAGTCGACATGAATAGTCCTCG
CTCGAACGCGGTTAATGGCGGCAGCGGCGGCGCCATCTCCGCTCTGCCCA
GCACTCTGGCCCAACTGGCTCTGCGCGACAAGCAGCAGGCTGCGTCGGCA
TCGGCGTCCTCTGCCACGAACGGCAGCAGCGGCAGCGAGTCCTTGGTGGG
CGTCGGTGGACGACCGCCCAATCAGCCGCCCAGTGTGCCAGTGGCCGCCA
GTGGCAAGCTGGACACCAGCGGCGGAGGCGCCTCCAACGGCGACTCGAAC
AAACTGACCCACGATCTGCAGGAGAAGGAGCACCAGCAGGCGCAGAAGCC
ACAGAAGCCACCGCTCCCGGTGCGCCAGAAGCCCATGGAGATCGCCGGCT
ATGTGGGCTTCGCCAACCTGCCCAATCAGGTCTATCGCAAGGCCGTCAAG
CGGGGATTCGAGTTCACTCTGATGGTGGTGGGCGCCAGTGGGCTGGGCAA
GTCGACGCTGATCAACTCCATGTTCCTGTCGGACATCTACAACGCGGAAC
AGTATCCGGGCCCCTCGCTGCGCAAAAAGAAGACCGTGGCCGTGGAGGCC
ACCAAAGTAATGCTCAAGGAGAACGGCGTCAATCTGACACTCACGGTGGT
GGACACACCCGGATTCGGTGATGCCGTTGACAACAGCAACTGCTGGGTGC
CCATACTGGAGTACGTGGATAGCAAGTACGAGGAGTACCTGACAGCCGAG
TCGCGGGTGTACCGAAAAACCATTTCGGACAGCCGGGTGCACTGCTGCCT
CTACTTCATAGCGCCATCGGGACACGGACTCCTGCCGCTGGACATTGCCT
GCATGCAGAGCCTGTCGGACAAGGTAAATCTGGTGCCGGTGATCGCCAAG
GCGGACACCATGACGCCCGACGAGGTGCATCTATTTAAGAAGCAGATCCT
TAACGAAGATCGCCCAGCACAAGATCAGATCTACGACTTCCCCGCACGCT
GGAAGATGCGGCCGAAGAAGGCAAACACGCAGAATTTGCGCAGCCGAATG
CCAATCGCGGTGGTGGGTGCACTCATCATCGGCAAGACGGAAAGGACGTC
AGGTAGGCGTATCCTGAACCTGGTGGAGGTGGAAAACTGACGCATTGCCA
CTTTAAGGCCGTGGCCAACATGGTCATAGCACAGCTACCTTCAGGGAACC
TAGGACCGGTGCAGAAACACAGGTCTTCATCACTACT
FMO03155.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnut-RA | 2445 | CG8705-RA | 205..1375 | 37..1195 | 5135 | 96.7 | Plus |
| pnut-RB | 3027 | CG8705-RB | 787..1957 | 37..1195 | 5135 | 96.7 | Plus |
| Sep1-RA | 2026 | CG1403-RA | 128..248 | 395..515 | 325 | 85.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8238057..8239093 | 37..1070 | 4885 | 98.9 | Plus |
| X | 23542271 | X | 21359531..21359651 | 395..515 | 320 | 84.3 | Plus |
| X | 23542271 | X | 21359819..21359916 | 617..714 | 205 | 80.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:39:31 has no hits.
FMO03155.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:37 Download gff for
FMO03155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RA | 195..1373 | 32..1201 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:35 Download gff for
FMO03155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RB | 783..1961 | 32..1201 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:32 Download gff for
FMO03155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RB | 783..1961 | 32..1201 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:32 Download gff for
FMO03155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8238053..8239231 | 32..1201 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:35 Download gff for
FMO03155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4125558..4126736 | 32..1201 | 96 | | Plus |
